Difference between revisions of "Sporulation"

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(Sporulation proteins/ other)
Line 161: Line 161:
  
 
=== Sporulation proteins/ other ===  
 
=== Sporulation proteins/ other ===  
 +
* ''[[abnA]]''
 +
* ''[[acdA]]''
 +
* ''[[acoA]]''
 +
* ''[[acoB]]''
 +
* ''[[acoC]]''
 +
* ''[[acoL]]''
 +
* ''[[acoR]]''
 
* ''[[adhB]]''
 
* ''[[adhB]]''
 +
* ''[[alkA]]''
 +
* ''[[amiE]]''
 +
* ''[[amyC]]''
 +
* ''[[amyD]]''
 +
* ''[[amyX]]''
 
* ''[[asd]]''
 
* ''[[asd]]''
 
* ''[[asnO]]''
 
* ''[[asnO]]''
Line 167: Line 179:
 
* ''[[bdbC]]''
 
* ''[[bdbC]]''
 
* ''[[bdbD]]''
 
* ''[[bdbD]]''
 +
* ''[[bglS]]''
 +
* ''[[bmrC]]''
 +
* ''[[bmrD]]''
 
* ''[[bofA]]''
 
* ''[[bofA]]''
 
* ''[[bofC]]''
 
* ''[[bofC]]''
 +
* ''[[bpsA]]''
 +
* ''[[bpsB]]''
 
* ''[[ccpB]]''
 
* ''[[ccpB]]''
 
* ''[[cdaS]]''
 
* ''[[cdaS]]''
 
* ''[[chaA]]''
 
* ''[[chaA]]''
 
* ''[[clpC]]''
 
* ''[[clpC]]''
 
+
* ''[[comER]]''
 
* ''[[coxA]]''
 
* ''[[coxA]]''
 
* ''[[csbX]]''
 
* ''[[csbX]]''
Line 181: Line 198:
 
* ''[[cwlD]]''
 
* ''[[cwlD]]''
 
* ''[[cwlH]]''
 
* ''[[cwlH]]''
 +
* ''[[cypA]]''
 
* ''[[dacB]]''
 
* ''[[dacB]]''
 
* ''[[dacF]]''
 
* ''[[dacF]]''
 
* ''[[dapA]]''
 
* ''[[dapA]]''
 
* ''[[dapG]]''
 
* ''[[dapG]]''
 +
* ''[[degQ]]''
 
* ''[[divIB]]''
 
* ''[[divIB]]''
 
* ''[[divIC]]''
 
* ''[[divIC]]''
Line 191: Line 210:
 
* ''[[exuT]]''
 
* ''[[exuT]]''
 
* ''[[fabL]]''
 
* ''[[fabL]]''
 +
* ''[[fadA]]''
 +
* ''[[fadF]]''
 +
* ''[[fadM]]''
 +
* ''[[fadN]]''
 
* ''[[fin]]''
 
* ''[[fin]]''
 
* ''[[fisB]]''
 
* ''[[fisB]]''
 
* ''[[ftsY]]''
 
* ''[[ftsY]]''
 +
* ''[[ggt]]''
 
* ''[[gin]]''
 
* ''[[gin]]''
 
* ''[[glcU]]''
 
* ''[[glcU]]''
Line 205: Line 229:
 
* ''[[glnP]]''
 
* ''[[glnP]]''
 
* ''[[glnQ]]''
 
* ''[[glnQ]]''
 +
* ''[[hemZ]]''
 
* ''[[htrC]]''
 
* ''[[htrC]]''
 +
* ''[[ispA]]''
 
* ''[[ispG]]''
 
* ''[[ispG]]''
 
* ''[[kamA]]''
 
* ''[[kamA]]''
 +
* ''[[kapD]]''
 
* ''[[katX]]''
 
* ''[[katX]]''
 +
* ''[[kbl]]''
 
* ''[[ksgA]]''
 
* ''[[ksgA]]''
 
+
* ''[[licA]]''
 +
* ''[[licB]]''
 +
* ''[[licC]]''
 +
* ''[[licH]]''
 
* ''[[lonB]]''
 
* ''[[lonB]]''
 
* ''[[lysA]]''
 
* ''[[lysA]]''
Line 217: Line 248:
 
* ''[[mcsA]]''
 
* ''[[mcsA]]''
 
* ''[[mcsB]]''
 
* ''[[mcsB]]''
 +
* ''[[melA]]''
 
* ''[[mmgA]]''
 
* ''[[mmgA]]''
 
* ''[[mmgB]]''
 
* ''[[mmgB]]''
Line 222: Line 254:
 
* ''[[mmgD]]''
 
* ''[[mmgD]]''
 
* ''[[mmgE]]''
 
* ''[[mmgE]]''
 +
* ''[[msmE]]''
 
* ''[[murB]]''
 
* ''[[murB]]''
 
* ''[[murG]]''
 
* ''[[murG]]''
 +
* ''[[murP]]''
 +
* ''[[murQ]]''
 +
* ''[[murR]]''
 
* ''[[mutTA]]''
 
* ''[[mutTA]]''
 +
* ''[[nagZ]]''
 
* ''[[nfo]]''
 
* ''[[nfo]]''
 +
* ''[[nrnB]]''
 
* ''[[pbpF]]''
 
* ''[[pbpF]]''
 
* ''[[pbpG]]''
 
* ''[[pbpG]]''
Line 231: Line 269:
 
* ''[[pdaA]]''
 
* ''[[pdaA]]''
 
* ''[[pdaB]]''
 
* ''[[pdaB]]''
 +
* ''[[pgcM]]''
 
* ''[[phoB]]''
 
* ''[[phoB]]''
 
* ''[[phoP]]''
 
* ''[[phoP]]''
 
* ''[[phoR]]''
 
* ''[[phoR]]''
 
* ''[[prkA]]''
 
* ''[[prkA]]''
 +
* ''[[pucH]]''
 +
* ''[[racA]]''
 
* ''[[remA]]''
 
* ''[[remA]]''
 
* ''[[rsfA]]''
 
* ''[[rsfA]]''
 
 
* ''[[sbp]]''
 
* ''[[sbp]]''
 
* ''[[scoA]]''
 
* ''[[scoA]]''
 
* ''[[scoB]]''
 
* ''[[scoB]]''
 
* ''[[seaA]]''
 
* ''[[seaA]]''
 +
* ''[[sigE]]''
 
* ''[[sigF]]''
 
* ''[[sigF]]''
 
* ''[[sigG]]''
 
* ''[[sigG]]''
Line 252: Line 293:
 
* ''[[spoIIAB]]''
 
* ''[[spoIIAB]]''
 
* ''[[spoIID]]''
 
* ''[[spoIID]]''
 +
* ''[[spoIIE]]''
 +
* ''[[spoIIM]]''
 +
* ''[[spoIIP]]''
 +
* ''[[spoIIQ]]''
 +
* ''[[spoIIR]]''
 +
* ''[[spoIISA]]''
 
* ''[[spoIIIAA]]''
 
* ''[[spoIIIAA]]''
 
* ''[[spoIIIAB]]''
 
* ''[[spoIIIAB]]''
Line 262: Line 309:
 
* ''[[spoIIIC]]''
 
* ''[[spoIIIC]]''
 
* ''[[spoIIID]]''
 
* ''[[spoIIID]]''
* ''[[spoIIM]]''
 
* ''[[spoIIP]]''
 
* ''[[spoIIQ]]''
 
* ''[[spoIIR]]''
 
* ''[[spoIISA]]''
 
 
* ''[[spoIVA]]''
 
* ''[[spoIVA]]''
 
* ''[[spoIVB]]''
 
* ''[[spoIVB]]''
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* ''[[spoVAF]]''
 
* ''[[spoVAF]]''
 
* ''[[spoVB]]''
 
* ''[[spoVB]]''
 +
* ''[[spoVC]]''
 
* ''[[spoVD]]''
 
* ''[[spoVD]]''
 
* ''[[spoVE]]''
 
* ''[[spoVE]]''
 
* ''[[spoVFA]]''
 
* ''[[spoVFA]]''
 
* ''[[spoVFB]]''
 
* ''[[spoVFB]]''
 
 
* ''[[spoVIF]]''
 
* ''[[spoVIF]]''
 
* ''[[spoVK]]''
 
* ''[[spoVK]]''
 
 
* ''[[spoVR]]''
 
* ''[[spoVR]]''
 
* ''[[spoVT]]''
 
* ''[[spoVT]]''
Line 302: Line 343:
 
* ''[[sscA]]''
 
* ''[[sscA]]''
 
* ''[[stoA]]''
 
* ''[[stoA]]''
 
+
* ''[[tdh]]''
 
* ''[[tlp]]''
 
* ''[[tlp]]''
 
* ''[[tuaF]]''
 
* ''[[tuaF]]''
 
* ''[[tuaG]]''
 
* ''[[tuaG]]''
 
* ''[[tuaH]]''
 
* ''[[tuaH]]''
 +
* ''[[ugd]]''
 
* ''[[usd]]''
 
* ''[[usd]]''
 
* ''[[uxaA]]''
 
* ''[[uxaA]]''
 
* ''[[uxaB]]''
 
* ''[[uxaB]]''
 
* ''[[uxuA]]''
 
* ''[[uxuA]]''
 
 
* ''[[yabP]]''
 
* ''[[yabP]]''
 
* ''[[yabQ]]''
 
* ''[[yabQ]]''
Line 322: Line 363:
 
* ''[[yckC]]''
 
* ''[[yckC]]''
 
* ''[[yckD]]''
 
* ''[[yckD]]''
 +
* ''[[yclF]]''
 +
* ''[[yclG]]''
 +
* ''[[yczM]]''
 
* ''[[ydcA]]''
 
* ''[[ydcA]]''
 
* ''[[ydcC]]''
 
* ''[[ydcC]]''
Line 328: Line 372:
 
* ''[[ydgA]]''
 
* ''[[ydgA]]''
 
* ''[[ydgB]]''
 
* ''[[ydgB]]''
 
 
* ''[[ydhF]]''
 
* ''[[ydhF]]''
 
* ''[[ydjP]]''
 
* ''[[ydjP]]''
 +
* ''[[ydzH]]''
 +
* ''[[ydzR]]''
 
* ''[[yeaA]]''
 
* ''[[yeaA]]''
 
* ''[[yesJ]]''
 
* ''[[yesJ]]''
 
* ''[[yesK]]''
 
* ''[[yesK]]''
 +
* ''[[yezF]]''
 
* ''[[yfnD]]''
 
* ''[[yfnD]]''
 
* ''[[yfnE]]''
 
* ''[[yfnE]]''
Line 339: Line 385:
 
* ''[[yfnG]]''
 
* ''[[yfnG]]''
 
* ''[[yfnH]]''
 
* ''[[yfnH]]''
 +
* ''[[ygzA]]''
 +
* ''[[ygzC]]''
 
* ''[[yhaL]]''
 
* ''[[yhaL]]''
 
 
* ''[[yhbH]]''
 
* ''[[yhbH]]''
 
* ''[[yhcM]]''
 
* ''[[yhcM]]''
Line 347: Line 394:
 
* ''[[yhcQ]]''
 
* ''[[yhcQ]]''
 
* ''[[yhcV]]''
 
* ''[[yhcV]]''
 
+
* ''[[yheA]]''
 
 
 
* ''[[yhfM]]''
 
* ''[[yhfM]]''
 
* ''[[yhfW]]''
 
* ''[[yhfW]]''
 
 
* ''[[yhxC]]''
 
* ''[[yhxC]]''
 
+
* ''[[yhzD]]''
 +
* ''[[yhzF]]''
 
* ''[[yisZ]]''
 
* ''[[yisZ]]''
 +
* ''[[yizC]]''
 +
* ''[[yizD]]''
 
* ''[[yitA]]''
 
* ''[[yitA]]''
 
* ''[[yitB]]''
 
* ''[[yitB]]''
Line 361: Line 409:
 
* ''[[yitF]]''
 
* ''[[yitF]]''
 
* ''[[yitG]]''
 
* ''[[yitG]]''
 +
* ''[[yjaU]]''
 
* ''[[yjaV]]''
 
* ''[[yjaV]]''
 
* ''[[yjbA]]''
 
* ''[[yjbA]]''
 
* ''[[yjcA]]''
 
* ''[[yjcA]]''
 
 
* ''[[yjfA]]''
 
* ''[[yjfA]]''
 
* ''[[yjmC]]''
 
* ''[[yjmC]]''
 
* ''[[yjmD]]''
 
* ''[[yjmD]]''
 
* ''[[yjmF]]''
 
* ''[[yjmF]]''
 
+
* ''[[yjzC]]''
 +
* ''[[yjzK]]''
 
* ''[[ykvI]]''
 
* ''[[ykvI]]''
 
 
* ''[[ykvQ]]''
 
* ''[[ykvQ]]''
 
* ''[[ylaJ]]''
 
* ''[[ylaJ]]''
Line 377: Line 425:
 
* ''[[ylbB]]''
 
* ''[[ylbB]]''
 
* ''[[ylbC]]''
 
* ''[[ylbC]]''
 
 
* ''[[ylbE]]''
 
* ''[[ylbE]]''
 
* ''[[ylbJ]]''
 
* ''[[ylbJ]]''
 
* ''[[ylmC]]''
 
* ''[[ylmC]]''
 +
* ''[[yloB]]''
 
* ''[[ylxW]]''
 
* ''[[ylxW]]''
 
* ''[[ylxX]]''
 
* ''[[ylxX]]''
 
* ''[[ylyA]]''
 
* ''[[ylyA]]''
 
+
* ''[[ymfD]]''
 
* ''[[ymxH]]''
 
* ''[[ymxH]]''
 
* ''[[yndA]]''
 
* ''[[yndA]]''
Line 396: Line 444:
 
* ''[[yngJ]]''
 
* ''[[yngJ]]''
 
* ''[[yoaR]]''
 
* ''[[yoaR]]''
 +
* ''[[yoaU]]''
 
* ''[[yoaW]]''
 
* ''[[yoaW]]''
 
* ''[[yobW]]''
 
* ''[[yobW]]''
 
* ''[[yocL]]''
 
* ''[[yocL]]''
 +
* ''[[yocN]]''
 
* ''[[yodH]]''
 
* ''[[yodH]]''
 
+
* ''[[yodU]]''
 
* ''[[yodP]]''
 
* ''[[yodP]]''
 
* ''[[yodQ]]''
 
* ''[[yodQ]]''
Line 406: Line 456:
 
* ''[[yodS]]''
 
* ''[[yodS]]''
 
* ''[[yodT]]''
 
* ''[[yodT]]''
 
 
* ''[[yokU]]''
 
* ''[[yokU]]''
 +
* ''[[yoqH]]''
 +
* ''[[yosA]]''
 +
* ''[[yotN]]''
 +
* ''[[yozP]]''
 
* ''[[yozQ]]''
 
* ''[[yozQ]]''
 
 
* ''[[ypfB]]''
 
* ''[[ypfB]]''
 
* ''[[yphA]]''
 
* ''[[yphA]]''
 
* ''[[ypjB]]''
 
* ''[[ypjB]]''
 
* ''[[ypqA]]''
 
* ''[[ypqA]]''
 +
* ''[[ypqP]]''
 +
* ''[[ypuI]]''
 
* ''[[ypzA]]''
 
* ''[[ypzA]]''
 +
* ''[[yqaN]]''
 +
* ''[[yqaO]]''
 
* ''[[yqcK]]''
 
* ''[[yqcK]]''
 
* ''[[yqfC]]''
 
* ''[[yqfC]]''
Line 429: Line 485:
 
* ''[[yqxA]]''
 
* ''[[yqxA]]''
 
* ''[[yqzG]]''
 
* ''[[yqzG]]''
 +
* ''[[yrbD]]''
 
* ''[[yrkC]]''
 
* ''[[yrkC]]''
 
* ''[[yrrD]]''
 
* ''[[yrrD]]''
 
* ''[[yrrS]]''
 
* ''[[yrrS]]''
 +
* ''[[yrzF]]''
 +
* ''[[yrzI]]''
 
* ''[[ytaF]]''
 
* ''[[ytaF]]''
 +
* ''[[ytaG]]''
 
* ''[[ytcC]]''
 
* ''[[ytcC]]''
 
* ''[[yteA]]''
 
* ''[[yteA]]''
 
* ''[[yteV]]''
 
* ''[[yteV]]''
 
* ''[[ytfI]]''
 
* ''[[ytfI]]''
 
+
* ''[[ythA]]''
 +
* ''[[ythB]]''
 
* ''[[ytlA]]''
 
* ''[[ytlA]]''
 
* ''[[ytlC]]''
 
* ''[[ytlC]]''
Line 445: Line 506:
 
* ''[[ytvI]]''
 
* ''[[ytvI]]''
 
* ''[[ytxC]]''
 
* ''[[ytxC]]''
 +
* ''[[yugS]]''
 +
* ''[[yugT]]''
 
* ''[[yuiC]]''
 
* ''[[yuiC]]''
 
 
* ''[[yurS]]''
 
* ''[[yurS]]''
 
* ''[[yusN]]''
 
* ''[[yusN]]''
 
* ''[[yuzA]]''
 
* ''[[yuzA]]''
 
 
* ''[[yvdQ]]''
 
* ''[[yvdQ]]''
 
* ''[[yveA]]''
 
* ''[[yveA]]''
 +
* ''[[yvnB]]''
 +
* ''[[ywbA]]''
 
* ''[[ywcA]]''
 
* ''[[ywcA]]''
 
* ''[[ywcB]]''
 
* ''[[ywcB]]''
 +
* ''[[ywcI]]''
 +
* ''[[ywhK]]''
 +
* ''[[ywhL]]''
 
* ''[[ywjD]]''
 
* ''[[ywjD]]''
 
* ''[[ywjE]]''
 
* ''[[ywjE]]''
 
 
* ''[[ywnJ]]''
 
* ''[[ywnJ]]''
 +
* ''[[ywoD]]''
 
* ''[[ywrJ]]''
 
* ''[[ywrJ]]''
 
* ''[[yxeD]]''
 
* ''[[yxeD]]''
Line 465: Line 531:
 
* ''[[yyaC]]''
 
* ''[[yyaC]]''
 
* ''[[yyaD]]''
 
* ''[[yyaD]]''
 +
* ''[[yycE]]''
  
 
=== Newly identified sporulation proteins (based on transcription profiling) ===
 
=== Newly identified sporulation proteins (based on transcription profiling) ===

Revision as of 10:40, 24 April 2014

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Spore coat proteins

Class I

  • these proteins completly cover the membrane around the forespore
  • early localizing spore coat proteins

Class II

  • these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
  • early localizing spore coat proteins

Class III

  • these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
  • early localizing spore coat proteins

Class IV

  • late localizing spore coat proteins (only after completion of engulfment)
  • intermediate between classes III and V

Class V

  • late localizing spore coat proteins (only after completion of engulfment)
  • localize exclusively to phase dark spores
  • localize simultaneously to both poles of the spore

Class VI

  • late localizing spore coat proteins (only after completion of engulfment)
  • most delayed initial localization
  • localize excluseively to phase bright spores

not yet assigned

Important publications on the spore coat


Spore coat protein/ based on similarity

Small acid-soluble spore proteins

Non-homologous end joining DNA repair

Sporulation proteins/ other

Newly identified sporulation proteins (based on transcription profiling)

Important reviews


Important original publications

Jordi van Gestel, Martin A Nowak, Corina E Tarnita
The evolution of cell-to-cell communication in a sporulating bacterium.
PLoS Comput Biol: 2012, 8(12);e1002818
[PubMed:23284278] [WorldCat.org] [DOI] (I p)

Wishwas Abhyankar, Alex Ter Beek, Henk Dekker, Remco Kort, Stanley Brul, Chris G de Koster
Gel-free proteomic identification of the Bacillus subtilis insoluble spore coat protein fraction.
Proteomics: 2011, 11(23);4541-50
[PubMed:21905219] [WorldCat.org] [DOI] (I p)

Langyong Mao, Shantong Jiang, Bin Wang, Liang Chen, Qin Yao, Keping Chen
Protein profile of Bacillus subtilis spore.
Curr Microbiol: 2011, 63(2);198-205
[PubMed:21667307] [WorldCat.org] [DOI] (I p)

Daisuke Imamura, Ritsuko Kuwana, Hiromu Takamatsu, Kazuhito Watabe
Proteins involved in formation of the outermost layer of Bacillus subtilis spores.
J Bacteriol: 2011, 193(16);4075-80
[PubMed:21665972] [WorldCat.org] [DOI] (I p)


Important web site: SporeWeb

  • SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • You can find:
    • detailed review-like descriptions of all sporulation stages,
    • schematic representations of regulatory events during every stage,
    • links to specific regulators and their regulons,
    • access to detailed Excel sheets of all sporulation-specific regulons,
    • Cytoscape-generated layouts of regulon interactions during a specific stage,
    • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
    • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
    • direct links to other knowledge platforms, such as SubtiWiki,
    • an extensive list of references for further detailed information.
  • The website is self explanatory, but you can also take a quick look at the short introduction video.
  • Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.


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