Difference between revisions of "Sporulation"

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(→‎Important publications on the spore coat)
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====Important publications on the spore coat====
 
====Important publications on the spore coat====
−
<pubmed> 22171814 20451384 22192522 23202530 22262582 24283940  26512126</pubmed>
+
<pubmed> 22171814 20451384 22192522 23202530 22262582 24283940  26512126 27790212</pubmed>
  
 
=== Spore coat protein/ based on similarity ===  
 
=== Spore coat protein/ based on similarity ===  
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* ''[[spoIIIC]]''
 
* ''[[spoIIIC]]''
 
* ''[[spoIIID]]''
 
* ''[[spoIIID]]''
 +
* ''[[spoIIIL]]''
 
* ''[[spoIIM]]''
 
* ''[[spoIIM]]''
 
* ''[[spoIIP]]''
 
* ''[[spoIIP]]''
 
* ''[[spoIIQ]]''
 
* ''[[spoIIQ]]''
 +
* ''[[spoIIT]]''
 
* ''[[spoIIR]]''
 
* ''[[spoIIR]]''
 
* ''[[spoIISA]]''
 
* ''[[spoIISA]]''
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* ''[[ykvQ]]''
 
* ''[[ykvQ]]''
 +
* ''[[ykzQ]]''
 
* ''[[ylaJ]]''
 
* ''[[ylaJ]]''
 
* ''[[ylaM]]''
 
* ''[[ylaM]]''
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* ''[[licH]]''
 
* ''[[licH]]''
 
* ''[[lplD]]''
 
* ''[[lplD]]''
 +
* ''[[mciZ]]''
 
* ''[[mdxE]]''
 
* ''[[mdxE]]''
 
* ''[[mdxF]]''
 
* ''[[mdxF]]''
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* ''[[melA]]''
 
* ''[[melA]]''
 
* ''[[msmE]]''
 
* ''[[msmE]]''
 +
* ''[[mstX]]''
 
* ''[[murP]]''
 
* ''[[murP]]''
 
* ''[[murQ]]''
 
* ''[[murQ]]''
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* ''[[yueG]]''
 
* ''[[yueG]]''
 
* ''[[yufS]]''
 
* ''[[yufS]]''
−
* ''[[yugF]]''  
+
* ''[[yugF]]''
 +
* ''[[yugO]]''  
 
* ''[[yugS]]''
 
* ''[[yugS]]''
 
* ''[[yugT]]''
 
* ''[[yugT]]''
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==Important reviews==
 
==Important reviews==
−
<pubmed>22091839 20833318 16045607 15819616 15659154 15556029 15187183 15035041 2257467 22882546 24983526 25646759</pubmed>
+
<pubmed>22091839 20833318 16045607 15819616 15659154 15556029 15187183 15035041 2257467 22882546 24983526 25646759   27364121 27148245 27501460
 +
</pubmed>
  
 
==Important original publications==
 
==Important original publications==
−
<pubmed>21667307 21665972 21905219 23284278 25341802 25356555 25548246 </pubmed>
+
<pubmed>21667307 21665972 21905219 23284278 25341802 25356555 25548246 26735940 29425492 </pubmed>
  
 
== Important web site: [http://sporeweb.molgenrug.nl/  SporeWeb] ==
 
== Important web site: [http://sporeweb.molgenrug.nl/  SporeWeb] ==

Latest revision as of 19:25, 11 February 2018

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Spore coat proteins

Class I

  • these proteins completly cover the membrane around the forespore
  • early localizing spore coat proteins

Class II

  • these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
  • early localizing spore coat proteins

Class III

  • these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
  • early localizing spore coat proteins

Class IV

  • late localizing spore coat proteins (only after completion of engulfment)
  • intermediate between classes III and V

Class V

  • late localizing spore coat proteins (only after completion of engulfment)
  • localize exclusively to phase dark spores
  • localize simultaneously to both poles of the spore

Class VI

  • late localizing spore coat proteins (only after completion of engulfment)
  • most delayed initial localization
  • localize excluseively to phase bright spores

not yet assigned

Important publications on the spore coat


Spore coat protein/ based on similarity

Small acid-soluble spore proteins

Non-homologous end joining DNA repair

Utilization of specific carbon sources

Sporulation proteins/ other


Newly identified sporulation proteins (based on transcription profiling)

Important reviews


Important original publications


Important web site: SporeWeb

  • SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • You can find:
    • detailed review-like descriptions of all sporulation stages,
    • schematic representations of regulatory events during every stage,
    • links to specific regulators and their regulons,
    • access to detailed Excel sheets of all sporulation-specific regulons,
    • Cytoscape-generated layouts of regulon interactions during a specific stage,
    • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
    • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
    • direct links to other knowledge platforms, such as SubtiWiki,
    • an extensive list of references for further detailed information.
  • The website is self explanatory, but you can also take a quick look at the short introduction video.
  • Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.


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