Difference between revisions of "Sporulation"

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m (Reverted edits by Julian (talk) to last revision by Jstuelk)
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=== Newly identified sporulation proteins (based on transcription profiling) ===
 
=== Newly identified sporulation proteins (based on transcription profiling) ===
 +
* ''[[abnA]]''
 +
* ''[[acdA]]''
 +
* ''[[acoA]]''
 +
* ''[[acoB]]''
 +
* ''[[acoC]]''
 +
* ''[[acoL]]''
 +
* ''[[acoR]]''
 +
* ''[[alkA]]''
 +
* ''[[amiE]]''
 +
* ''[[amyC]]''
 +
* ''[[amyD]]''
 +
* ''[[amyX]]''
 
* ''[[araL]]''  
 
* ''[[araL]]''  
−
* ''[[araM]]''  
+
* ''[[araM]]''
 +
* ''[[bglS]]''
 +
* ''[[bmrC]]''
 +
* ''[[bmrD]]''
 +
* ''[[bpsA]]''
 +
* ''[[bpsB]]''
 
* ''[[citA]]''  
 
* ''[[citA]]''  
 
* ''[[citH]]''
 
* ''[[citH]]''
−
* ''[[lplD]]''  
+
* ''[[comER]]''
 +
* ''[[cypA]]''
 +
* ''[[degQ]]''
 +
* ''[[fadA]]''
 +
* ''[[fadF]]''
 +
* ''[[fadM]]''
 +
* ''[[fadN]]''
 +
* ''[[ggt]]''
 +
* ''[[hemZ]]''
 +
* ''[[ispA]]''
 +
* ''[[kapD]]''
 +
* ''[[kbl]]''
 +
* ''[[licA]]''
 +
* ''[[licB]]''
 +
* ''[[licC]]''
 +
* ''[[licH]]''
 +
* ''[[lplD]]''
 +
* ''[[mdxE]]''
 +
* ''[[mdxF]]''
 +
* ''[[mdxG]]''
 +
* ''[[melA]]''
 +
* ''[[msmE]]''
 +
* ''[[murP]]''
 +
* ''[[murQ]]''
 +
* ''[[murR]]''
 +
* ''[[nrnB]]''
 +
* ''[[nagZ]]''
 +
* ''[[pgcM]]''
 +
* ''[[pucH]]''
 +
* ''[[racA]]''
 +
* ''[[tdh]]''
 +
* ''[[sigE]]''
 +
* ''[[spoIIE]]''
 +
* ''[[spoVC]]''
 +
* ''[[ugd]]''
 
* ''[[xpaC]]''  
 
* ''[[xpaC]]''  
 
* ''[[yaaC]]''
 
* ''[[yaaC]]''
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* ''[[ycgH]]''  
 
* ''[[ycgH]]''  
 
* ''[[ycgL]]''
 
* ''[[ycgL]]''
 +
* ''[[yclF]]''
 +
* ''[[yclG]]''
 +
* ''[[yczM]]''
 +
* ''[[ydzH]]''
 +
* ''[[ydzR]]''
 
* ''[[yerA]]''  
 
* ''[[yerA]]''  
 
* ''[[yetF]]''
 
* ''[[yetF]]''
 +
* ''[[yezF]]''
 +
* ''[[ygzA]]''
 +
* ''[[ygzC]]''
 
* ''[[yfhM]]''  
 
* ''[[yfhM]]''  
 
* ''[[yfhS]]''
 
* ''[[yfhS]]''
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* ''[[yflN]]''
 
* ''[[yflN]]''
 
* ''[[yfmA]]''
 
* ''[[yfmA]]''
−
 
+
* ''[[yhaR]]''
−
* ''[[yhaR]]''  
+
* ''[[yheA]]''
−
 
 
 
* ''[[yhcT]]''
 
* ''[[yhcT]]''
 
* ''[[yhcW]]''  
 
* ''[[yhcW]]''  
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* ''[[yhfN]]''
 
* ''[[yhfN]]''
 
* ''[[yhjQ]]''
 
* ''[[yhjQ]]''
−
 
+
* ''[[yhzD]]''
 +
* ''[[yhzF]]''
 
* ''[[yisN]]''
 
* ''[[yisN]]''
 
* ''[[yitE]]''
 
* ''[[yitE]]''
 
* ''[[yitQ]]''
 
* ''[[yitQ]]''
 +
* ''[[yizC]]''
 +
* ''[[yizD]]''
 +
* ''[[yjaU]]''
 
* ''[[yjaZ]]''  
 
* ''[[yjaZ]]''  
 
* ''[[yjbE]]''
 
* ''[[yjbE]]''
 
* ''[[yjnA]]''
 
* ''[[yjnA]]''
 
* ''[[yjqC]]''
 
* ''[[yjqC]]''
−
 
+
* ''[[yjzC]]''
 +
* ''[[yjzK]]''
 
* ''[[ykjA]]''
 
* ''[[ykjA]]''
 
* ''[[ykoN]]''
 
* ''[[ykoN]]''
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* ''[[ykzE]]''  
 
* ''[[ykzE]]''  
 
* ''[[ykzH]]''
 
* ''[[ykzH]]''
−
* ''[[ylaK]]''  
+
* ''[[ylaK]]''
 +
* ''[[yloB]]''
 
* ''[[ylxY]]''  
 
* ''[[ylxY]]''  
 
* ''[[ymaF]]''
 
* ''[[ymaF]]''
 +
* ''[[ymfD]]''
 
* ''[[ymfH]]''
 
* ''[[ymfH]]''
 
* ''[[ymfI]]''   
 
* ''[[ymfI]]''   
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* ''[[yoaM]]''
 
* ''[[yoaM]]''
 
* ''[[yoaQ]]''
 
* ''[[yoaQ]]''
−
 
+
* ''[[yoaU]]''
 +
* ''[[yocN]]''
 +
* ''[[yodU]]''
 
* ''[[yodL]]''
 
* ''[[yodL]]''
 
* ''[[yodN]]''
 
* ''[[yodN]]''
 
* ''[[yojB]]''
 
* ''[[yojB]]''
 +
* ''[[yoqH]]''
 +
* ''[[yosA]]''
 
* ''[[yotE]]''  
 
* ''[[yotE]]''  
−
* ''[[yotG]]''  
+
* ''[[yotG]]''
 +
* ''[[yotN]]''
 
* ''[[yozD]]''  
 
* ''[[yozD]]''  
 
* ''[[yozE]]''  
 
* ''[[yozE]]''  
 
* ''[[yozF]]''
 
* ''[[yozF]]''
 
* ''[[yozN]]''
 
* ''[[yozN]]''
 +
* ''[[yozP]]''
 
* ''[[ypeP]]''
 
* ''[[ypeP]]''
 
* ''[[ypeQ]]''
 
* ''[[ypeQ]]''
 
* ''[[yppC]]''  
 
* ''[[yppC]]''  
 
* ''[[yppD]]''
 
* ''[[yppD]]''
−
 
+
* ''[[ypqP]]''
 
* ''[[yptA]]''
 
* ''[[yptA]]''
 +
* ''[[ypuI]]''
 
* ''[[yqcI]]''
 
* ''[[yqcI]]''
−
 
 
* ''[[ypzC]]''
 
* ''[[ypzC]]''
 +
* ''[[yqaN]]''
 +
* ''[[yqaO]]''
 
* ''[[yqeC]]''  
 
* ''[[yqeC]]''  
−
 
 
* ''[[yqgE]]''
 
* ''[[yqgE]]''
 
* ''[[yqgO]]''
 
* ''[[yqgO]]''
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* ''[[yqjC]]''
 
* ''[[yqjC]]''
 
* ''[[yrbE]]''  
 
* ''[[yrbE]]''  
 +
* ''[[yrbD]]''
 
* ''[[yrbG]]''
 
* ''[[yrbG]]''
 
* ''[[yrdN]]''  
 
* ''[[yrdN]]''  
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* ''[[yrzA]]''
 
* ''[[yrzA]]''
 
* ''[[yrzE]]''
 
* ''[[yrzE]]''
 +
* ''[[yrzF]]''
 +
* ''[[yrzI]]''
 
* ''[[yrzK]]''  
 
* ''[[yrzK]]''  
 
* ''[[ysnE]]''  
 
* ''[[ysnE]]''  
 +
* ''[[ytaG]]''
 
* ''[[ytcA]]''  
 
* ''[[ytcA]]''  
 
* ''[[ytcB]]''  
 
* ''[[ytcB]]''  
 
* ''[[ytdA]]''  
 
* ''[[ytdA]]''  
 
* ''[[yteT]]''
 
* ''[[yteT]]''
 +
* ''[[ythA]]''
 +
* ''[[ythB]]''
 
* ''[[ytvB]]''
 
* ''[[ytvB]]''
 
* ''[[ytwI]]''
 
* ''[[ytwI]]''
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* ''[[yufS]]''
 
* ''[[yufS]]''
 
* ''[[yugF]]''  
 
* ''[[yugF]]''  
 +
* ''[[yugS]]''
 +
* ''[[yugT]]''
 
* ''[[yumB]]''  
 
* ''[[yumB]]''  
 
* ''[[yunC]]''
 
* ''[[yunC]]''
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* ''[[yvaM]]''  
 
* ''[[yvaM]]''  
 
* ''[[yvdA]]''  
 
* ''[[yvdA]]''  
 +
* ''[[yvnB]]''
 
* ''[[ywaF]]''  
 
* ''[[ywaF]]''  
 
* ''[[ywbB]]''
 
* ''[[ywbB]]''
 
* ''[[ywkF]]''
 
* ''[[ywkF]]''
 +
* ''[[ywbA]]''
 +
* ''[[ywcI]]''
 +
* ''[[ywhK]]''
 +
* ''[[ywhL]]''
 
* ''[[ywmA]]''
 
* ''[[ywmA]]''
 
* ''[[ywnG]]''
 
* ''[[ywnG]]''
 
* ''[[ywoC]]''
 
* ''[[ywoC]]''
 +
* ''[[ywoD]]''
 
* ''[[ywqH]]''  
 
* ''[[ywqH]]''  
 
* ''[[ywqI]]''  
 
* ''[[ywqI]]''  
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* ''[[yyaL]]''
 
* ''[[yyaL]]''
 
* ''[[yybP]]''
 
* ''[[yybP]]''
 +
* ''[[yycE]]''
 
* ''[[yycN]]''  
 
* ''[[yycN]]''  
 
* ''[[yycO]]''  
 
* ''[[yycO]]''  

Revision as of 12:42, 24 April 2014

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Spore coat proteins

Class I

  • these proteins completly cover the membrane around the forespore
  • early localizing spore coat proteins

Class II

  • these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
  • early localizing spore coat proteins

Class III

  • these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
  • early localizing spore coat proteins

Class IV

  • late localizing spore coat proteins (only after completion of engulfment)
  • intermediate between classes III and V

Class V

  • late localizing spore coat proteins (only after completion of engulfment)
  • localize exclusively to phase dark spores
  • localize simultaneously to both poles of the spore

Class VI

  • late localizing spore coat proteins (only after completion of engulfment)
  • most delayed initial localization
  • localize excluseively to phase bright spores

not yet assigned

Important publications on the spore coat


Spore coat protein/ based on similarity

Small acid-soluble spore proteins

Non-homologous end joining DNA repair

Sporulation proteins/ other


Newly identified sporulation proteins (based on transcription profiling)

Important reviews


Important original publications


Important web site: SporeWeb

  • SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • You can find:
    • detailed review-like descriptions of all sporulation stages,
    • schematic representations of regulatory events during every stage,
    • links to specific regulators and their regulons,
    • access to detailed Excel sheets of all sporulation-specific regulons,
    • Cytoscape-generated layouts of regulon interactions during a specific stage,
    • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
    • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
    • direct links to other knowledge platforms, such as SubtiWiki,
    • an extensive list of references for further detailed information.
  • The website is self explanatory, but you can also take a quick look at the short introduction video.
  • Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.

Robyn T Eijlander, Anne de Jong, Antonina O Krawczyk, Siger Holsappel, Oscar P Kuipers
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis.
Nucleic Acids Res: 2014, 42(Database issue);D685-91
[PubMed:24170806] [WorldCat.org] [DOI] (I p)


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