Difference between revisions of "Sporulation"

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(→‎Important publications on the spore coat)
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==== not yet assigned ====
 
==== not yet assigned ====
 
* ''[[cgeA]]''
 
* ''[[cgeA]]''
 +
* ''[[cgeB]]''
 +
* ''[[cgeC]]''
 +
* ''[[cgeD]]''
 +
* ''[[cgeE]]''
 
* ''[[cmpA]]''
 
* ''[[cmpA]]''
 
* ''[[cotC]]''
 
* ''[[cotC]]''
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* ''[[gerR]]''
 
* ''[[gerR]]''
 
* ''[[gerT]]''
 
* ''[[gerT]]''
 +
* ''[[ldt]]''
 +
* ''[[safA]]''
 +
* ''[[yabG]]''
 +
* ''[[ygaK]]''
 +
* ''[[ydhD]]''
 +
* ''[[yhbB]]''
 +
* ''[[yheC]]''
 +
* ''[[yobN]]''
 +
* ''[[yodI]]''
 +
* ''[[ypeP]]''
 +
* ''[[yqfT]]''
 +
* ywqH
 +
  
 
====Important publications on the spore coat====
 
====Important publications on the spore coat====
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* ''[[ccpB]]''
 
* ''[[ccpB]]''
 
* ''[[cdaS]]''
 
* ''[[cdaS]]''
−
* ''[[cgeB]]''
+
 
−
* ''[[cgeC]]''
+
 
−
* ''[[cgeD]]''
 
−
* ''[[cgeE]]''
 
 
* ''[[chaA]]''
 
* ''[[chaA]]''
 
* ''[[clpC]]''
 
* ''[[clpC]]''
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* ''[[katX]]''
 
* ''[[katX]]''
 
* ''[[ksgA]]''
 
* ''[[ksgA]]''
−
* ''[[ldt]]''
+
 
 
* ''[[lonB]]''
 
* ''[[lonB]]''
 
* ''[[lysA]]''
 
* ''[[lysA]]''
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* ''[[remA]]''
 
* ''[[remA]]''
 
* ''[[rsfA]]''
 
* ''[[rsfA]]''
−
* ''[[safA]]''
+
 
 
* ''[[sbp]]''
 
* ''[[sbp]]''
 
* ''[[scoA]]''
 
* ''[[scoA]]''
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* ''[[uxaB]]''
 
* ''[[uxaB]]''
 
* ''[[uxuA]]''
 
* ''[[uxuA]]''
−
* ''[[yabG]]''
+
 
 
* ''[[yabP]]''
 
* ''[[yabP]]''
 
* ''[[yabQ]]''
 
* ''[[yabQ]]''
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* ''[[ydgA]]''
 
* ''[[ydgA]]''
 
* ''[[ydgB]]''
 
* ''[[ydgB]]''
−
* ''[[ydhD]]''
+
 
 
* ''[[ydhF]]''
 
* ''[[ydhF]]''
 
* ''[[ydjP]]''
 
* ''[[ydjP]]''
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* ''[[yhcQ]]''
 
* ''[[yhcQ]]''
 
* ''[[yhcV]]''
 
* ''[[yhcV]]''
−
* ''[[yheC]]''
+
 
  
 
* ''[[yhfM]]''
 
* ''[[yhfM]]''
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* ''[[yocL]]''
 
* ''[[yocL]]''
 
* ''[[yodH]]''
 
* ''[[yodH]]''
−
* ''[[yodI]]''
+
 
 
* ''[[yodP]]''
 
* ''[[yodP]]''
 
* ''[[yodQ]]''
 
* ''[[yodQ]]''
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* ''[[yflN]]''
 
* ''[[yflN]]''
 
* ''[[yfmA]]''
 
* ''[[yfmA]]''
−
* ''[[ygaK]]''
+
 
 
* ''[[yhaR]]''  
 
* ''[[yhaR]]''  
−
* ''[[yhbB]]''
+
 
 
* ''[[yhcT]]''
 
* ''[[yhcT]]''
 
* ''[[yhcW]]''  
 
* ''[[yhcW]]''  
Line 518: Line 533:
 
* ''[[yoaM]]''
 
* ''[[yoaM]]''
 
* ''[[yoaQ]]''
 
* ''[[yoaQ]]''
−
* ''[[yobN]]''
+
 
 
* ''[[yodL]]''
 
* ''[[yodL]]''
 
* ''[[yodN]]''
 
* ''[[yodN]]''
Line 538: Line 553:
 
* ''[[ypzC]]''
 
* ''[[ypzC]]''
 
* ''[[yqeC]]''  
 
* ''[[yqeC]]''  
−
* ''[[yqfT]]''
+
 
 
* ''[[yqgE]]''
 
* ''[[yqgE]]''
 
* ''[[yqgO]]''
 
* ''[[yqgO]]''

Revision as of 10:26, 29 November 2013

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Spore coat proteins

Class I

  • these proteins completly cover the membrane around the forespore
  • early localizing spore coat proteins

Class II

  • these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
  • early localizing spore coat proteins

Class III

  • these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
  • early localizing spore coat proteins

Class IV

  • late localizing spore coat proteins (only after completion of engulfment)
  • intermediate between classes III and V

Class V

  • late localizing spore coat proteins (only after completion of engulfment)
  • localize exclusively to phase dark spores
  • localize simultaneously to both poles of the spore

Class VI

  • late localizing spore coat proteins (only after completion of engulfment)
  • most delayed initial localization
  • localize excluseively to phase bright spores

not yet assigned


Important publications on the spore coat


Spore coat protein/ based on similarity

Small acid-soluble spore proteins

Non-homologous end joining DNA repair

Sporulation proteins/ other



Newly identified sporulation proteins (based on transcription profiling)

Important reviews


Important original publications

Jordi van Gestel, Martin A Nowak, Corina E Tarnita
The evolution of cell-to-cell communication in a sporulating bacterium.
PLoS Comput Biol: 2012, 8(12);e1002818
[PubMed:23284278] [WorldCat.org] [DOI] (I p)

Wishwas Abhyankar, Alex Ter Beek, Henk Dekker, Remco Kort, Stanley Brul, Chris G de Koster
Gel-free proteomic identification of the Bacillus subtilis insoluble spore coat protein fraction.
Proteomics: 2011, 11(23);4541-50
[PubMed:21905219] [WorldCat.org] [DOI] (I p)

Langyong Mao, Shantong Jiang, Bin Wang, Liang Chen, Qin Yao, Keping Chen
Protein profile of Bacillus subtilis spore.
Curr Microbiol: 2011, 63(2);198-205
[PubMed:21667307] [WorldCat.org] [DOI] (I p)

Daisuke Imamura, Ritsuko Kuwana, Hiromu Takamatsu, Kazuhito Watabe
Proteins involved in formation of the outermost layer of Bacillus subtilis spores.
J Bacteriol: 2011, 193(16);4075-80
[PubMed:21665972] [WorldCat.org] [DOI] (I p)


Important web site: SporeWeb

  • SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • You can find:
    • detailed review-like descriptions of all sporulation stages,
    • schematic representations of regulatory events during every stage,
    • links to specific regulators and their regulons,
    • access to detailed Excel sheets of all sporulation-specific regulons,
    • Cytoscape-generated layouts of regulon interactions during a specific stage,
    • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
    • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
    • direct links to other knowledge platforms, such as SubtiWiki,
    • an extensive list of references for further detailed information.
  • The website is self explanatory, but you can also take a quick look at the short introduction video.
  • Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.

Robyn T Eijlander, Anne de Jong, Antonina O Krawczyk, Siger Holsappel, Oscar P Kuipers
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis.
Nucleic Acids Res: 2014, 42(Database issue);D685-91
[PubMed:24170806] [WorldCat.org] [DOI] (I p)


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