Difference between revisions of "Sporulation"

From SubtiWiki
Jump to: navigation, search
(→‎Important publications on the spore coat)
Line 93: Line 93:
 
==== not yet assigned ====
 
==== not yet assigned ====
 
* ''[[cgeA]]''
 
* ''[[cgeA]]''
 +
* ''[[cgeB]]''
 +
* ''[[cgeC]]''
 +
* ''[[cgeD]]''
 +
* ''[[cgeE]]''
 
* ''[[cmpA]]''
 
* ''[[cmpA]]''
 
* ''[[cotC]]''
 
* ''[[cotC]]''
Line 108: Line 112:
 
* ''[[gerR]]''
 
* ''[[gerR]]''
 
* ''[[gerT]]''
 
* ''[[gerT]]''
 +
* ''[[ldt]]''
 +
* ''[[safA]]''
 +
* ''[[yabG]]''
 +
* ''[[ygaK]]''
 +
* ''[[ydhD]]''
 +
* ''[[yhbB]]''
 +
* ''[[yheC]]''
 +
* ''[[yobN]]''
 +
* ''[[yodI]]''
 +
* ''[[ypeP]]''
 +
* ''[[yqfT]]''
 +
* ywqH
 +
  
 
====Important publications on the spore coat====
 
====Important publications on the spore coat====
Line 151: Line 168:
 
* ''[[ccpB]]''
 
* ''[[ccpB]]''
 
* ''[[cdaS]]''
 
* ''[[cdaS]]''
−
* ''[[cgeB]]''
+
 
−
* ''[[cgeC]]''
+
 
−
* ''[[cgeD]]''
 
−
* ''[[cgeE]]''
 
 
* ''[[chaA]]''
 
* ''[[chaA]]''
 
* ''[[clpC]]''
 
* ''[[clpC]]''
Line 192: Line 207:
 
* ''[[katX]]''
 
* ''[[katX]]''
 
* ''[[ksgA]]''
 
* ''[[ksgA]]''
−
* ''[[ldt]]''
+
 
 
* ''[[lonB]]''
 
* ''[[lonB]]''
 
* ''[[lysA]]''
 
* ''[[lysA]]''
Line 218: Line 233:
 
* ''[[remA]]''
 
* ''[[remA]]''
 
* ''[[rsfA]]''
 
* ''[[rsfA]]''
−
* ''[[safA]]''
+
 
 
* ''[[sbp]]''
 
* ''[[sbp]]''
 
* ''[[scoA]]''
 
* ''[[scoA]]''
Line 292: Line 307:
 
* ''[[uxaB]]''
 
* ''[[uxaB]]''
 
* ''[[uxuA]]''
 
* ''[[uxuA]]''
−
* ''[[yabG]]''
+
 
 
* ''[[yabP]]''
 
* ''[[yabP]]''
 
* ''[[yabQ]]''
 
* ''[[yabQ]]''
Line 309: Line 324:
 
* ''[[ydgA]]''
 
* ''[[ydgA]]''
 
* ''[[ydgB]]''
 
* ''[[ydgB]]''
−
* ''[[ydhD]]''
+
 
 
* ''[[ydhF]]''
 
* ''[[ydhF]]''
 
* ''[[ydjP]]''
 
* ''[[ydjP]]''
Line 328: Line 343:
 
* ''[[yhcQ]]''
 
* ''[[yhcQ]]''
 
* ''[[yhcV]]''
 
* ''[[yhcV]]''
−
* ''[[yheC]]''
+
 
  
 
* ''[[yhfM]]''
 
* ''[[yhfM]]''
Line 381: Line 396:
 
* ''[[yocL]]''
 
* ''[[yocL]]''
 
* ''[[yodH]]''
 
* ''[[yodH]]''
−
* ''[[yodI]]''
+
 
 
* ''[[yodP]]''
 
* ''[[yodP]]''
 
* ''[[yodQ]]''
 
* ''[[yodQ]]''
Line 470: Line 485:
 
* ''[[yflN]]''
 
* ''[[yflN]]''
 
* ''[[yfmA]]''
 
* ''[[yfmA]]''
−
* ''[[ygaK]]''
+
 
 
* ''[[yhaR]]''  
 
* ''[[yhaR]]''  
−
* ''[[yhbB]]''
+
 
 
* ''[[yhcT]]''
 
* ''[[yhcT]]''
 
* ''[[yhcW]]''  
 
* ''[[yhcW]]''  
Line 518: Line 533:
 
* ''[[yoaM]]''
 
* ''[[yoaM]]''
 
* ''[[yoaQ]]''
 
* ''[[yoaQ]]''
−
* ''[[yobN]]''
+
 
 
* ''[[yodL]]''
 
* ''[[yodL]]''
 
* ''[[yodN]]''
 
* ''[[yodN]]''
Line 538: Line 553:
 
* ''[[ypzC]]''
 
* ''[[ypzC]]''
 
* ''[[yqeC]]''  
 
* ''[[yqeC]]''  
−
* ''[[yqfT]]''
+
 
 
* ''[[yqgE]]''
 
* ''[[yqgE]]''
 
* ''[[yqgO]]''
 
* ''[[yqgO]]''

Revision as of 10:26, 29 November 2013

Parent categories
Neighbouring categories
Related categories

Genes in this functional category

Spore coat proteins

Class I

  • these proteins completly cover the membrane around the forespore
  • early localizing spore coat proteins

Class II

  • these proteins localize simultaneously with the class I proteins but begin to encase the spore only after engulfment is complete
  • early localizing spore coat proteins

Class III

  • these proteins localize simultaneously with the class I and class II proteins but start to encase the spore only after the appearance of phase dark spores (hr 4.5)
  • early localizing spore coat proteins

Class IV

  • late localizing spore coat proteins (only after completion of engulfment)
  • intermediate between classes III and V

Class V

  • late localizing spore coat proteins (only after completion of engulfment)
  • localize exclusively to phase dark spores
  • localize simultaneously to both poles of the spore

Class VI

  • late localizing spore coat proteins (only after completion of engulfment)
  • most delayed initial localization
  • localize excluseively to phase bright spores

not yet assigned


Important publications on the spore coat

Hong Qin, Adam Driks
Contrasting evolutionary patterns of spore coat proteins in two Bacillus species groups are linked to a difference in cellular structure.
BMC Evol Biol: 2013, 13;261
[PubMed:24283940] [WorldCat.org] [DOI] (I e)

Peter T McKenney, Adam Driks, Patrick Eichenberger
The Bacillus subtilis endospore: assembly and functions of the multilayered coat.
Nat Rev Microbiol: 2013, 11(1);33-44
[PubMed:23202530] [WorldCat.org] [DOI] (I p)

Haiyan Qiao, Daniela Krajcikova, Caisheng Liu, Yongjun Li, Hongda Wang, Imrich Barak, Jilin Tang
The interactions of spore-coat morphogenetic proteins studied by single-molecule recognition force spectroscopy.
Chem Asian J: 2012, 7(4);725-31
[PubMed:22262582] [WorldCat.org] [DOI] (I p)

Peter Setlow
Dynamics of the assembly of a complex macromolecular structure--the coat of spores of the bacterium Bacillus subtilis.
Mol Microbiol: 2012, 83(2);241-4
[PubMed:22192522] [WorldCat.org] [DOI] (I p)

Peter T McKenney, Patrick Eichenberger
Dynamics of spore coat morphogenesis in Bacillus subtilis.
Mol Microbiol: 2012, 83(2);245-60
[PubMed:22171814] [WorldCat.org] [DOI] (I p)

Peter T McKenney, Adam Driks, Haig A Eskandarian, Paul Grabowski, Jonathan Guberman, Katherine H Wang, Zemer Gitai, Patrick Eichenberger
A distance-weighted interaction map reveals a previously uncharacterized layer of the Bacillus subtilis spore coat.
Curr Biol: 2010, 20(10);934-8
[PubMed:20451384] [WorldCat.org] [DOI] (I p)


Spore coat protein/ based on similarity

Small acid-soluble spore proteins

Non-homologous end joining DNA repair

Sporulation proteins/ other



Newly identified sporulation proteins (based on transcription profiling)

Important reviews


Important original publications


Important web site: SporeWeb

  • SporeWeb is a dynamic web-based platform describing all stages of sporulation in B. subtilis from a gene regulatory point of view. The website is intended for all microbial researches interested in bacterial sporulation and/or gene regulatory networks and contains useful information for both sporulation experts and non-experts.
  • You can find:
    • detailed review-like descriptions of all sporulation stages,
    • schematic representations of regulatory events during every stage,
    • links to specific regulators and their regulons,
    • access to detailed Excel sheets of all sporulation-specific regulons,
    • Cytoscape-generated layouts of regulon interactions during a specific stage,
    • a tool to generate your own Cytoscape interaction figure for specific genes of interest,
    • heat maps showing expression values of all sporulation genes during the sporulation cycle (derived from Nicolas et al., 2012),
    • direct links to other knowledge platforms, such as SubtiWiki,
    • an extensive list of references for further detailed information.
  • The website is self explanatory, but you can also take a quick look at the short introduction video.
  • Importantly, the website is database driven: it can (and will) be updated as new exciting insights become available in literature.

Robyn T Eijlander, Anne de Jong, Antonina O Krawczyk, Siger Holsappel, Oscar P Kuipers
SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis.
Nucleic Acids Res: 2014, 42(Database issue);D685-91
[PubMed:24170806] [WorldCat.org] [DOI] (I p)


Back to categories

Retrieved from "http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Sporulation&oldid=195734"