Difference between revisions of "Translation"
(→Ribosome assembly) |
(→tRNA modification and maturation) |
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* ''[[yabC]]'' | * ''[[yabC]]'' | ||
* ''[[ylbH]]'' | * ''[[ylbH]]'' | ||
| + | * ''[[ylbN]]'' | ||
* ''[[yloM]]'' | * ''[[yloM]]'' | ||
* ''[[yloN]]'' | * ''[[yloN]]'' | ||
* ''[[ypsC]]'' | * ''[[ypsC]]'' | ||
| + | * ''[[yrrK]]'' | ||
* ''[[ytzG]]'' | * ''[[ytzG]]'' | ||
* ''[[yydA]]'' | * ''[[yydA]]'' | ||
| Line 106: | Line 108: | ||
* ''[[rpmGA]]'' | * ''[[rpmGA]]'' | ||
* ''[[rpmGB]]'' | * ''[[rpmGB]]'' | ||
| + | * ''[[rpmGC]]'' | ||
* ''[[rpmH]]'' | * ''[[rpmH]]'' | ||
* ''[[rpmI]]'' | * ''[[rpmI]]'' | ||
| Line 130: | Line 133: | ||
* ''[[rpsU]]'' | * ''[[rpsU]]'' | ||
* ''[[ybxF]]'' | * ''[[ybxF]]'' | ||
| − | * ''[[ | + | * ''[[rpsNB]]'' |
| − | * ''[[ | + | * ''[[rpmEB]]'' |
=== Ribosomal protein/ based on similarity === | === Ribosomal protein/ based on similarity === | ||
| Line 247: | Line 250: | ||
* ''[[gidA]]'' | * ''[[gidA]]'' | ||
* ''[[miaA]]'' | * ''[[miaA]]'' | ||
| + | * ''[[mtaB]]'' | ||
| + | |||
* ''[[nifZ]]'' | * ''[[nifZ]]'' | ||
* ''[[queA]]'' | * ''[[queA]]'' | ||
| Line 258: | Line 263: | ||
* ''[[rnz]]'' | * ''[[rnz]]'' | ||
* ''[[rph]]'' | * ''[[rph]]'' | ||
| + | * ''[[tcdA]]'' | ||
* ''[[tgt]]'' | * ''[[tgt]]'' | ||
* ''[[thdF]]'' | * ''[[thdF]]'' | ||
| Line 276: | Line 282: | ||
* ''[[yacF]]'' | * ''[[yacF]]'' | ||
* ''[[yfjN]]'' | * ''[[yfjN]]'' | ||
| + | * ''[[ylbM]]'' | ||
* ''[[ymcB]]'' | * ''[[ymcB]]'' | ||
| − | + | ||
| − | * ''[[ | + | * ''[[yrvO]]'' |
=== tRNA modification and maturation/ based on similarity === | === tRNA modification and maturation/ based on similarity === | ||
* ''[[yjdI]]'' | * ''[[yjdI]]'' | ||
| − | |||
=== Aminoacyl-tRNA synthetases === | === Aminoacyl-tRNA synthetases === | ||
| Line 323: | Line 329: | ||
* ''[[infB]]'' | * ''[[infB]]'' | ||
* ''[[infC]]'' | * ''[[infC]]'' | ||
| + | * ''[[lepA]]'' | ||
* ''[[prfA]]'' | * ''[[prfA]]'' | ||
* ''[[prfB]]'' | * ''[[prfB]]'' | ||
| Line 340: | Line 347: | ||
* ''[[ssrA]]'' | * ''[[ssrA]]'' | ||
* ''[[yflG]]'' | * ''[[yflG]]'' | ||
| + | * ''[[ynbA]]'' | ||
* ''[[yqeL]]'' | * ''[[yqeL]]'' | ||
* ''[[yqeT]]'' | * ''[[yqeT]]'' | ||
| Line 358: | Line 366: | ||
= Important publications= | = Important publications= | ||
| − | <pubmed>22456704 22848659 22905870 24809820 24789973 </pubmed> | + | <pubmed>22456704 22848659 22905870 24809820 24789973 25796611 26518335 28271488</pubmed> |
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 09:31, 5 October 2018
| Parent categories | |
| Neighbouring categories |
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| Related categories | |
Contents
- 1 Genes in this functional category
- 1.1 Ribosomal RNA
- 1.2 rRNA modification and maturation
- 1.3 rRNA modification and maturation/ based on similarity
- 1.4 Ribosomal proteins
- 1.5 Ribosomal protein/ based on similarity
- 1.6 Ribosome assembly
- 1.7 tRNA
- 1.8 tRNA modification and maturation
- 1.9 tRNA modification and maturation/ based on similarity
- 1.10 Aminoacyl-tRNA synthetases
- 1.11 Translation factors
- 1.12 Translation/ other
- 1.13 Translation/ other/ based on similarity
- 2 Important publications
- 3 Back to categories
Genes in this functional category
Ribosomal RNA
- rrnA-16S
- rrnA-23S
- rrnA-5S
- rrnB-16S
- rrnB-23S
- rrnB-5S
- rrnD-16S
- rrnD-23S
- rrnD-5S
- rrnE-16S
- rrnE-23S
- rrnE-5S
- rrnG-16S
- rrnG-23S
- rrnG-5S
- rrnH-16S
- rrnH-23S
- rrnH-5S
- rrnI-16S
- rrnI-23S
- rrnI-5S
- rrnJ-16S
- rrnJ-23S
- rrnJ-5S
- rrnO-16S
- rrnO-23S
- rrnO-5S
- rrnW-16S
- rrnW-23S
- rrnW-5S
rRNA modification and maturation
rRNA modification and maturation/ based on similarity
Ribosomal proteins
- ctc
- rplA
- rplB
- rplC
- rplD
- rplE
- rplF
- rplI
- rplJ
- rplK
- rplL
- rplM
- rplN
- rplO
- rplP
- rplQ
- rplR
- rplS
- rplT
- rplU
- rplV
- rplW
- rplX
- rpmA
- rpmB
- rpmC
- rpmD
- rpmE
- rpmF
- rpmGA
- rpmGB
- rpmGC
- rpmH
- rpmI
- rpmJ
- rpsB
- rpsC
- rpsD
- rpsE
- rpsF
- rpsG
- rpsH
- rpsI
- rpsJ
- rpsK
- rpsL
- rpsM
- rpsN
- rpsO
- rpsP
- rpsQ
- rpsR
- rpsS
- rpsT
- rpsU
- ybxF
- rpsNB
- rpmEB
Ribosomal protein/ based on similarity
Ribosome assembly
tRNA
- trnA-Ala
- trnA-Ile
- trnB-Ala
- trnB-Arg
- trnB-Asn
- trnB-Asp
- trnB-Glu
- trnB-Gly1
- trnB-Gly2
- trnB-His
- trnB-Ile2
- trnB-Leu1
- trnB-Leu2
- trnB-Lys
- trnB-Met1
- trnB-Met2
- trnB-Met3
- trnB-Phe
- trnB-Pro
- trnB-Ser1
- trnB-Ser2
- trnB-Thr
- trnB-Val
- trnD-Asn
- trnD-Asp
- trnD-Cys
- trnD-Gln
- trnD-Glu
- trnD-Gly
- trnD-His
- trnD-Leu1
- trnD-Leu2
- trnD-Met
- trnD-Phe
- trnD-Ser
- trnD-Thr
- trnD-Trp
- trnD-Tyr
- trnD-Val
- trnE-Arg
- trnE-Asp
- trnE-Gly
- trnE-Met
- trnI-Ala
- trnI-Arg
- trnI-Asn
- trnI-Gly
- trnI-Pro
- trnI-Thr
- trnJ-Ala
- trnJ-Arg
- trnJ-Gly
- trnJ-Leu1
- trnJ-Leu2
- trnJ-Lys
- trnJ-Pro
- trnJ-Thr
- trnJ-Val
- trnO-Ala
- trnO-Ile
- trnQ-Arg
- trnS-Asn
- trnS-Gln
- trnS-Glu
- trnS-Leu1
- trnS-Leu2
- trnS-Lys
- trnS-Ser
- trnSL-Ala1
- trnSL-Arg1
- trnSL-Arg2
- trnSL-Gln1
- trnSL-Gln2
- trnSL-Glu1
- trnSL-Glu2
- trnSL-Gly1
- trnSL-Met1
- trnSL-Ser1
- trnSL-Thr1
- trnSL-Tyr1
- trnSL-Val1
- trnSL-Val2
- trnY-Asp
- trnY-Glu
- trnY-Lys
- trnY-Phe
tRNA modification and maturation
- nifZ
- queA
- queC
- queD
- queE
- queF
- queG
- rnpA
- rnpB
- rnz
- rph
- tcdA
- tgt
- thdF
- thiI
- tilS
- trmB
- trmD
- trmFO
- trmK
- trmU
- truA
- truB
- tsaB
- tsaC
- tsaD
- tsaE
- yaaJ
- yacF
- yfjN
- ylbM
- ymcB
tRNA modification and maturation/ based on similarity
Aminoacyl-tRNA synthetases
- alaS
- argS
- asnS
- aspS
- cysS
- gatA
- gatB
- gatC
- gltX
- glyQ
- glyS
- hisS
- hisZ
- ileS
- leuS
- lysS
- metS
- pheS
- pheT
- proS
- serS
- thrS
- thrZ
- trpS
- tyrS
- tyrZ
- valS
- ytpR
Discussion of the structure of aminoacyl-tRNA synthetases
Translation factors
Translation/ other
Translation/ other/ based on similarity
Important publications
Marc Mirande
The Aminoacyl-tRNA Synthetase Complex.
Subcell Biochem: 2017, 83;505-522
[PubMed:28271488]
[WorldCat.org]
[DOI]
(P p)
Koichi Yano, Kenta Masuda, Genki Akanuma, Tetsuya Wada, Takashi Matsumoto, Yuh Shiwa, Taichiro Ishige, Hirofumi Yoshikawa, Hironori Niki, Takashi Inaoka, Fujio Kawamura
Growth and sporulation defects in Bacillus subtilis mutants with a single rrn operon can be suppressed by amplification of the rrn operon.
Microbiology (Reading): 2016, 162(1);35-45
[PubMed:26518335]
[WorldCat.org]
[DOI]
(I p)
Jennifer Shepherd, Michael Ibba
Bacterial transfer RNAs.
FEMS Microbiol Rev: 2015, 39(3);280-300
[PubMed:25796611]
[WorldCat.org]
[DOI]
(I p)
Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard, Alain Blanchard
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.
PLoS Genet: 2014, 10(5);e1004363
[PubMed:24809820]
[WorldCat.org]
[DOI]
(I e)
Matthew H Larson, Rachel A Mooney, Jason M Peters, Tricia Windgassen, Dhananjaya Nayak, Carol A Gross, Steven M Block, William J Greenleaf, Robert Landick, Jonathan S Weissman
A pause sequence enriched at translation start sites drives transcription dynamics in vivo.
Science: 2014, 344(6187);1042-7
[PubMed:24789973]
[WorldCat.org]
[DOI]
(I p)
Basma El Yacoubi, Marc Bailly, Valérie de Crécy-Lagard
Biosynthesis and function of posttranscriptional modifications of transfer RNAs.
Annu Rev Genet: 2012, 46;69-95
[PubMed:22905870]
[WorldCat.org]
[DOI]
(I p)
Alex Rosenberg, Lior Sinai, Yoav Smith, Sigal Ben-Yehuda
Dynamic expression of the translational machinery during Bacillus subtilis life cycle at a single cell level.
PLoS One: 2012, 7(7);e41921
[PubMed:22848659]
[WorldCat.org]
[DOI]
(I p)
Gene-Wei Li, Eugene Oh, Jonathan S Weissman
The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria.
Nature: 2012, 484(7395);538-41
[PubMed:22456704]
[WorldCat.org]
[DOI]
(I e)
