Difference between revisions of "CcpA regulon"
(→Important publications on the CcpA regulon) |
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=== Activation === | === Activation === | ||
* ''[[ackA]]'' | * ''[[ackA]]'' | ||
| + | * ''[[degU]]'' | ||
* ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]'' | * ''[[ilvB]]-[[ilvH]]-[[ilvC]]-[[leuA]]-[[leuB]]-[[leuC]]-[[leuD]]'' | ||
| + | * ''[[opuE]]'' | ||
* ''[[pta]]'' | * ''[[pta]]'' | ||
=== Repression === | === Repression === | ||
* ''[[abbA]]-[[ykuL]]-[[ccpC]]'' | * ''[[abbA]]-[[ykuL]]-[[ccpC]]'' | ||
| + | * ''[[abf2]]'' | ||
| + | * ''[[abnA]]'' | ||
* ''[[abn2]]'' | * ''[[abn2]]'' | ||
* ''[[acoA]]-[[acoB]]-[[acoC]]-[[acoL]]'' | * ''[[acoA]]-[[acoB]]-[[acoC]]-[[acoL]]'' | ||
| Line 24: | Line 28: | ||
* ''[[cccA]]'' | * ''[[cccA]]'' | ||
* ''[[cimH]]'' | * ''[[cimH]]'' | ||
| + | * ''[[citB]]'' | ||
* ''[[citM]]-[[yflN]]'' | * ''[[citM]]-[[yflN]]'' | ||
* ''[[citZ]]-[[icd]]-[[mdh]]'' | * ''[[citZ]]-[[icd]]-[[mdh]]'' | ||
| + | * ''[[csbX]]'' | ||
* ''[[cstA]]'' | * ''[[cstA]]'' | ||
* ''[[ctaC]]'' | * ''[[ctaC]]'' | ||
| Line 40: | Line 46: | ||
* ''[[gmuB]]-[[gmuA]]-[[gmuC]]-[[gmuD]]-[[gmuR]]-[[gmuE]]-[[gmuF]]-[[gmuG]]'' | * ''[[gmuB]]-[[gmuA]]-[[gmuC]]-[[gmuD]]-[[gmuR]]-[[gmuE]]-[[gmuF]]-[[gmuG]]'' | ||
* ''[[gntR]]-[[gntK]]-[[gntP]]-[[gntZ]]'' | * ''[[gntR]]-[[gntK]]-[[gntP]]-[[gntZ]]'' | ||
| + | * ''[[hbuT]]-[[scoA]]-[[scoB]]-[[yxjF]]'' | ||
* ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]'' | * ''[[hutP]]-[[hutH]]-[[hutU]]-[[hutI]]-[[hutG]]-[[hutM]]'' | ||
* ''[[iolA]]-[[iolB]]-[[iolC]]-[[iolD]]-[[iolE]]-[[iolF]]-[[iolG]]-[[iolH]]-[[iolI]]-[[iolJ]]'' | * ''[[iolA]]-[[iolB]]-[[iolC]]-[[iolD]]-[[iolE]]-[[iolF]]-[[iolG]]-[[iolH]]-[[iolI]]-[[iolJ]]'' | ||
| Line 50: | Line 57: | ||
* ''[[licB]]-[[licC]]-[[licA]]-[[licH]]'' | * ''[[licB]]-[[licC]]-[[licA]]-[[licH]]'' | ||
* ''[[malA]]-[[glvR]]-[[malP]]'' | * ''[[malA]]-[[glvR]]-[[malP]]'' | ||
| + | * ''[[manR]]'' | ||
| + | * ''[[mleN]]-[[mleA]]'' | ||
* ''[[mmgA]]-[[mmgB]]-[[mmgC]]-[[mmgD]]-[[mmgE]]-[[yqiQ]]'' | * ''[[mmgA]]-[[mmgB]]-[[mmgC]]-[[mmgD]]-[[mmgE]]-[[yqiQ]]'' | ||
| + | * ''[[msmR]]-[[msmE]]-[[amyD]]-[[amyC]]-[[melA]]'' | ||
* ''[[yxkF]]-[[msmX]]'' | * ''[[yxkF]]-[[msmX]]'' | ||
| + | * ''[[mtlR]]'' | ||
* ''[[nagA]]'' | * ''[[nagA]]'' | ||
* ''[[odhA]]-[[odhB]]'' | * ''[[odhA]]-[[odhB]]'' | ||
| Line 62: | Line 73: | ||
* ''[[rapF]]'' | * ''[[rapF]]'' | ||
* ''[[rbsR]]-[[rbsK]]-[[rbsD]]-[[rbsA]]-[[rbsC]]-[[rbsB]]'' | * ''[[rbsR]]-[[rbsK]]-[[rbsD]]-[[rbsA]]-[[rbsC]]-[[rbsB]]'' | ||
| + | * ''[[refZ]]'' | ||
* ''[[resA]]-[[resB]]-[[resC]]-[[resD]]-[[resE]]'' | * ''[[resA]]-[[resB]]-[[resC]]-[[resD]]-[[resE]]'' | ||
| + | * ''[[rhaEW]]-[[rhaR]]-[[rhaB]]-[[rhaM]]-[[rhaA]]'' | ||
* ''[[rocG]]'' | * ''[[rocG]]'' | ||
* ''[[rsbV]]-[[rsbW]]-[[sigB]]-[[rsbX]]'' | * ''[[rsbV]]-[[rsbW]]-[[sigB]]-[[rsbX]]'' | ||
* ''[[sacP]]-[[sacA]]-[[ywdA]]'' | * ''[[sacP]]-[[sacA]]-[[ywdA]]'' | ||
| − | + | ||
* ''[[sigL]]'' | * ''[[sigL]]'' | ||
* ''[[sucC]]-[[sucD]]'' | * ''[[sucC]]-[[sucD]]'' | ||
* ''[[treP]]-[[treA]]-[[treR]]'' | * ''[[treP]]-[[treA]]-[[treR]]'' | ||
* ''[[uxaC]]-[[yjmB]]-[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]'' | * ''[[uxaC]]-[[yjmB]]-[[yjmC]]-[[yjmD]]-[[uxuA]]-[[yjmF]]-[[exuT]]-[[exuR]]-[[uxaB]]-[[uxaA]]'' | ||
| + | * ''[[wprA]]'' | ||
* ''[[xylA]]'' | * ''[[xylA]]'' | ||
* ''[[xylB]]'' | * ''[[xylB]]'' | ||
| Line 84: | Line 98: | ||
* ''[[ypiF]]'' | * ''[[ypiF]]'' | ||
* ''[[yqxI]]'' | * ''[[yqxI]]'' | ||
| − | |||
* ''[[yvcI]]'' | * ''[[yvcI]]'' | ||
* ''[[yvmB]]'' | * ''[[yvmB]]'' | ||
| Line 90: | Line 103: | ||
= Important publications on the [[CcpA]] regulon = | = Important publications on the [[CcpA]] regulon = | ||
| − | <pubmed>12850135 ,11251851,10559165, 11160890,17183215 22383848 </pubmed> | + | <pubmed>12850135 ,11251851,10559165, 11160890,17183215 22383848 22900538 26483775</pubmed> |
=Back to [[regulons]]= | =Back to [[regulons]]= | ||
Latest revision as of 13:29, 4 January 2016
| Regulator | |
Contents
Genes in this regulon
Activation
Repression
- abbA-ykuL-ccpC
- abf2
- abnA
- abn2
- acoA-acoB-acoC-acoL
- acoR-sspH
- acsA
- acuA-acuB-acuC
- amyE
- araA-araB-araD-araL-araM-araN-araP-araQ-abfA
- araE
- bglP-bglH-yxiE
- bglS
- cccA
- cimH
- citB
- citM-yflN
- citZ-icd-mdh
- csbX
- cstA
- ctaC
- cwlS
- cydA-cydB-cydC-cydD
- dctP
- dra-nupC-pdp
- fadB
- fadN-fadA-fadE
- galK-galT
- glpD
- glpF-glpK
- glpTglpQ
- gmuB-gmuA-gmuC-gmuD-gmuR-gmuE-gmuF-gmuG
- gntR-gntK-gntP-gntZ
- hbuT-scoA-scoB-yxjF
- hutP-hutH-hutU-hutI-hutG-hutM
- iolA-iolB-iolC-iolD-iolE-iolF-iolG-iolH-iolI-iolJ
- kdgR-kdgK-kdgA-kdgT
- kduI-kduD
- lcfA-fadR-fadB-etfB-etfA
- lcfB
- ldt
- levD-levE-levF-levG-sacC
- licB-licC-licA-licH
- malA-glvR-malP
- manR
- mleN-mleA
- mmgA-mmgB-mmgC-mmgD-mmgE-yqiQ
- msmR-msmE-amyD-amyC-melA
- yxkF-msmX
- mtlR
- nagA
- odhA-odhB
- pel
- phoP-phoR
- phrC
- phrE
- phrG
- qcrA
- rapF
- rbsR-rbsK-rbsD-rbsA-rbsC-rbsB
- refZ
- resA-resB-resC-resD-resE
- rhaEW-rhaR-rhaB-rhaM-rhaA
- rocG
- rsbV-rsbW-sigB-rsbX
- sacP-sacA-ywdA
- sigL
- sucC-sucD
- treP-treA-treR
- uxaC-yjmB-yjmC-yjmD-uxuA-yjmF-exuT-exuR-uxaB-uxaA
- wprA
- xylA
- xylB
- xynB
- xynP
- yesM
- yfkN
- yhaR
- ylbP
- yobO
- yopL
- yozM
- ypiF
- yqxI
- yvcI
- yvmB
- yvnA
Important publications on the CcpA regulon
Ruud Detert Oude Weme, Gerald Seidel, Oscar P Kuipers
Probing the regulatory effects of specific mutations in three major binding domains of the pleiotropic regulator CcpA of Bacillus subtilis.
Front Microbiol: 2015, 6;1051
[PubMed:26483775]
[WorldCat.org]
[DOI]
(P e)
Bogumiła C Marciniak, Monika Pabijaniak, Anne de Jong, Robert Dűhring, Gerald Seidel, Wolfgang Hillen, Oscar P Kuipers
High- and low-affinity cre boxes for CcpA binding in Bacillus subtilis revealed by genome-wide analysis.
BMC Genomics: 2012, 13;401
[PubMed:22900538]
[WorldCat.org]
[DOI]
(I e)
Joerg Martin Buescher, Wolfram Liebermeister, Matthieu Jules, Markus Uhr, Jan Muntel, Eric Botella, Bernd Hessling, Roelco Jacobus Kleijn, Ludovic Le Chat, François Lecointe, Ulrike Mäder, Pierre Nicolas, Sjouke Piersma, Frank Rügheimer, Dörte Becher, Philippe Bessieres, Elena Bidnenko, Emma L Denham, Etienne Dervyn, Kevin M Devine, Geoff Doherty, Samuel Drulhe, Liza Felicori, Mark J Fogg, Anne Goelzer, Annette Hansen, Colin R Harwood, Michael Hecker, Sebastian Hubner, Claus Hultschig, Hanne Jarmer, Edda Klipp, Aurélie Leduc, Peter Lewis, Frank Molina, Philippe Noirot, Sabine Peres, Nathalie Pigeonneau, Susanne Pohl, Simon Rasmussen, Bernd Rinn, Marc Schaffer, Julian Schnidder, Benno Schwikowski, Jan Maarten Van Dijl, Patrick Veiga, Sean Walsh, Anthony J Wilkinson, Jörg Stelling, Stéphane Aymerich, Uwe Sauer
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
Science: 2012, 335(6072);1099-103
[PubMed:22383848]
[WorldCat.org]
[DOI]
(I p)
Andrzej T Lulko, Girbe Buist, Jan Kok, Oscar P Kuipers
Transcriptome analysis of temporal regulation of carbon metabolism by CcpA in Bacillus subtilis reveals additional target genes.
J Mol Microbiol Biotechnol: 2007, 12(1-2);82-95
[PubMed:17183215]
[WorldCat.org]
[DOI]
(P p)
Hans-Matti Blencke, Georg Homuth, Holger Ludwig, Ulrike Mäder, Michael Hecker, Jörg Stülke
Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.
Metab Eng: 2003, 5(2);133-49
[PubMed:12850135]
[WorldCat.org]
[DOI]
(P p)
M S Moreno, B L Schneider, R R Maile, W Weyler, M H Saier
Catabolite repression mediated by the CcpA protein in Bacillus subtilis: novel modes of regulation revealed by whole-genome analyses.
Mol Microbiol: 2001, 39(5);1366-81
[PubMed:11251851]
[WorldCat.org]
[DOI]
(P p)
K Yoshida, K Kobayashi, Y Miwa, C M Kang, M Matsunaga, H Yamaguchi, S Tojo, M Yamamoto, R Nishi, N Ogasawara, T Nakayama, Y Fujita
Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis.
Nucleic Acids Res: 2001, 29(3);683-92
[PubMed:11160890]
[WorldCat.org]
[DOI]
(I p)
S Tobisch, D Zühlke, J Bernhardt, J Stülke, M Hecker
Role of CcpA in regulation of the central pathways of carbon catabolism in Bacillus subtilis.
J Bacteriol: 1999, 181(22);6996-7004
[PubMed:10559165]
[WorldCat.org]
[DOI]
(P p)
