Difference between revisions of "Regulons"
(→DNA-binding regulators) |
(→RNA switches) |
||
| (24 intermediate revisions by 2 users not shown) | |||
| Line 19: | Line 19: | ||
* [[Xpf regulon]], see also [[Xpf]] | * [[Xpf regulon]], see also [[Xpf]] | ||
* [[YlaC regulon]], see also [[YlaC]] | * [[YlaC regulon]], see also [[YlaC]] | ||
| − | * [[ | + | * [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]] |
= DNA-binding regulators = | = DNA-binding regulators = | ||
| Line 34: | Line 34: | ||
* [[AraR regulon]], see also [[AraR]] | * [[AraR regulon]], see also [[AraR]] | ||
* [[ArsR regulon]], see also [[ArsR]] | * [[ArsR regulon]], see also [[ArsR]] | ||
| + | * [[AscR regulon]], see also [[AscR]] | ||
* [[AseR regulon]], see also [[AseR]] | * [[AseR regulon]], see also [[AseR]] | ||
* [[AzlB regulon]], see also [[AzlB]] | * [[AzlB regulon]], see also [[AzlB]] | ||
| Line 48: | Line 49: | ||
* [[CcpN regulon]], see also [[CcpN]] | * [[CcpN regulon]], see also [[CcpN]] | ||
* [[CggR regulon]], see also [[CggR]] | * [[CggR regulon]], see also [[CggR]] | ||
| + | * [[ChrS regulon]], see also [[ChrS]] | ||
* [[CitR regulon]], see also [[CitR]] | * [[CitR regulon]], see also [[CitR]] | ||
* [[CitT regulon]], see also [[CitT]] | * [[CitT regulon]], see also [[CitT]] | ||
| Line 63: | Line 65: | ||
* [[DesR regulon]], see also [[DesR]] | * [[DesR regulon]], see also [[DesR]] | ||
* [[DnaA regulon]], see also [[DnaA]] | * [[DnaA regulon]], see also [[DnaA]] | ||
| + | * [[DtrR regulon]], see also [[DtrR]] | ||
* [[ExuR regulon]], see also [[ExuR]] | * [[ExuR regulon]], see also [[ExuR]] | ||
* [[FadR regulon]], see also [[FadR]] | * [[FadR regulon]], see also [[FadR]] | ||
| Line 72: | Line 75: | ||
* [[Fur regulon]], see also [[Fur]] | * [[Fur regulon]], see also [[Fur]] | ||
* [[GabR regulon]], see also [[GabR]] | * [[GabR regulon]], see also [[GabR]] | ||
| + | * [[GamR regulon]], see also [[GamR]] | ||
* [[GbsR regulon]], see also [[GbsR]] | * [[GbsR regulon]], see also [[GbsR]] | ||
* [[GerE regulon]], see also [[GerE]] | * [[GerE regulon]], see also [[GerE]] | ||
| Line 97: | Line 101: | ||
* [[LmrA regulon]], see also [[LmrA]] | * [[LmrA regulon]], see also [[LmrA]] | ||
* [[LutR regulon]], see also [[LutR]] | * [[LutR regulon]], see also [[LutR]] | ||
| + | * [[LytT regulon]], see also [[LytT]] | ||
* [[MalR regulon]], see also [[MalR]] | * [[MalR regulon]], see also [[MalR]] | ||
* [[ManR regulon]], see also [[ManR]] | * [[ManR regulon]], see also [[ManR]] | ||
| Line 108: | Line 113: | ||
* [[NagR regulon]], see also [[NagR]] | * [[NagR regulon]], see also [[NagR]] | ||
* [[NatR regulon]], see also [[NatR]] | * [[NatR regulon]], see also [[NatR]] | ||
| + | * [[NrdR regulon]], see also [[NrdR]] | ||
* [[NsrR regulon]], see also [[NsrR]] | * [[NsrR regulon]], see also [[NsrR]] | ||
* [[NtdR regulon]], see also [[NtdR]] | * [[NtdR regulon]], see also [[NtdR]] | ||
* [[OhrR regulon]], see also [[OhrR]] | * [[OhrR regulon]], see also [[OhrR]] | ||
| + | * [[OpcR regulon]], see also [[OpcR]] | ||
* [[PadR regulon]], see also [[PadR]] | * [[PadR regulon]], see also [[PadR]] | ||
| + | * [[PchR regulon]], see also [[YvmB]] | ||
* [[PerR regulon]], see also [[PerR]] | * [[PerR regulon]], see also [[PerR]] | ||
* [[PhoP regulon]], see also [[PhoP]] | * [[PhoP regulon]], see also [[PhoP]] | ||
| Line 123: | Line 131: | ||
* [[Rex regulon]], see also [[Rex]] | * [[Rex regulon]], see also [[Rex]] | ||
* [[RghR regulon]], see also [[RghR]] | * [[RghR regulon]], see also [[RghR]] | ||
| + | * [[RhaR regulon]], see also [[RhaR]] | ||
| + | * [[RhgR regulon]], see also [[RhgR]] | ||
* [[RocR regulon]], see also [[RocR]] | * [[RocR regulon]], see also [[RocR]] | ||
* [[Rok regulon]], see also [[Rok]] | * [[Rok regulon]], see also [[Rok]] | ||
| Line 137: | Line 147: | ||
* [[SpoVT regulon]], see also [[SpoVT]] | * [[SpoVT regulon]], see also [[SpoVT]] | ||
* [[Spx regulon]], see also [[Spx]] | * [[Spx regulon]], see also [[Spx]] | ||
| + | * [[TilS-HprT regulon]], see also [[TilS]], [[HprT]] | ||
| + | * [[ThrR regulon]], see also [[ThrR]] | ||
* [[TnrA regulon]], see also [[TnrA]] | * [[TnrA regulon]], see also [[TnrA]] | ||
* [[TreR regulon]], see also [[TreR]] | * [[TreR regulon]], see also [[TreR]] | ||
* [[WalR regulon]], see also [[WalR]] | * [[WalR regulon]], see also [[WalR]] | ||
* [[Xre regulon]], see also [[Xre]] | * [[Xre regulon]], see also [[Xre]] | ||
| − | * [[XylR | + | * [[XylR regulon]], see also [[XylR]] |
| − | + | ||
| − | * [[ | + | * [[YcbG regulon]], see also [[YcbG]] |
* [[YclJ regulon]], see also [[YclJ]] | * [[YclJ regulon]], see also [[YclJ]] | ||
* [[YcnK regulon]], see also [[YcnK]] | * [[YcnK regulon]], see also [[YcnK]] | ||
* [[YdfI regulon]], see also [[YdfI]] | * [[YdfI regulon]], see also [[YdfI]] | ||
| − | + | ||
* [[YetL regulon]], see also [[YetL]] | * [[YetL regulon]], see also [[YetL]] | ||
* [[YfhP regulon]], see also [[YfhP]] | * [[YfhP regulon]], see also [[YfhP]] | ||
| + | * [[YfiK regulon]], see also [[YfiK]] | ||
* [[YfmP regulon]], see also [[YfmP]] | * [[YfmP regulon]], see also [[YfmP]] | ||
* [[YkrK regulon]], see also [[YkrK]] | * [[YkrK regulon]], see also [[YkrK]] | ||
| Line 155: | Line 168: | ||
* [[YofA regulon]], see also [[YofA]] | * [[YofA regulon]], see also [[YofA]] | ||
* [[YrkP regulon]], see also [[YrkP]] | * [[YrkP regulon]], see also [[YrkP]] | ||
| − | |||
* [[YtrA regulon]], see also [[YtrA]] | * [[YtrA regulon]], see also [[YtrA]] | ||
* [[YvrHb regulon]], see also [[YvrHb]] | * [[YvrHb regulon]], see also [[YvrHb]] | ||
| + | * [[YwbI regulon]], see also [[YwbI]] | ||
* [[YwcC regulon]], see also [[YwcC]] | * [[YwcC regulon]], see also [[YwcC]] | ||
* [[YxdJ regulon]], see also [[YxdJ]] | * [[YxdJ regulon]], see also [[YxdJ]] | ||
| Line 165: | Line 178: | ||
* [[A-box]] | * [[A-box]] | ||
| + | * [[B12 riboswitch]] | ||
* [[EAR riboswitch]] | * [[EAR riboswitch]] | ||
* [[FMN-box]] | * [[FMN-box]] | ||
| Line 186: | Line 200: | ||
* [[TRAP regulon]], see also [[MtrB]] | * [[TRAP regulon]], see also [[MtrB]] | ||
* [[YdaO riboswitch]] | * [[YdaO riboswitch]] | ||
| + | * [[YkkC riboswitch]] | ||
| + | * [[yybP-ykoY motif]] | ||
* [[RNA switch/ other]] | * [[RNA switch/ other]] | ||
| + | |||
| + | = [[RNases]] = | ||
| + | * [[RNase III targets]] | ||
| + | * [[RNase Y targets]] | ||
= Additional regulatory mechanisms = | = Additional regulatory mechanisms = | ||
| − | + | * [[BmrB regulon]], see also [[BmrB]] | |
* [[CitB regulon]], see also [[CitB]] | * [[CitB regulon]], see also [[CitB]] | ||
* [[ComN regulon]], see also [[ComN]] | * [[ComN regulon]], see also [[ComN]] | ||
| Line 195: | Line 215: | ||
* [[FbpB regulon]], see also ''[[FbpB]]'' | * [[FbpB regulon]], see also ''[[FbpB]]'' | ||
* [[fsrA regulon]], see also ''[[fsrA]]'' | * [[fsrA regulon]], see also ''[[fsrA]]'' | ||
| + | * [[Kre regulon]], see also [[Kre]] | ||
* [[MifM regulon]], see also [[MifM]] | * [[MifM regulon]], see also [[MifM]] | ||
* [[as-bsrH regulon]], see also ''[[as-bsrH]]'' | * [[as-bsrH regulon]], see also ''[[as-bsrH]]'' | ||
* [[as-yonT regulon]], see also ''[[as-yonT]]'' | * [[as-yonT regulon]], see also ''[[as-yonT]]'' | ||
* [[ratA regulon]], see also ''[[ratA]]'' | * [[ratA regulon]], see also ''[[ratA]]'' | ||
| − | * [[ | + | * [[RoxS regulon]], see also [[RoxS]] |
* [[SR1 regulon]], see also [[sr1]] | * [[SR1 regulon]], see also [[sr1]] | ||
* [[Stringent response]] | * [[Stringent response]] | ||
Latest revision as of 09:13, 22 December 2016
Overview on the regulons in B. subtilis
Contents
Sigma factors
- SigB regulon, see also SigB
- SigD regulon, see also SigD
- SigE regulon, see also SigE
- SigF regulon, see also SigF
- SigG regulon, see also SigG
- SigH regulon, see also SigH
- SigI regulon, see also SigI
- SigK regulon, see also SigK
- SigL regulon, see also SigL
- SigM regulon, see also SigM
- SigV regulon, see also SigV
- SigW regulon, see also SigW
- SigX regulon, see also SigX
- SigY regulon, see also SigY
- Xpf regulon, see also Xpf
- YlaC regulon, see also YlaC
- SigO-RsoA regulon, see also SigO and RsoA
DNA-binding regulators
- Abh regulon, see also Abh
- AbrB regulon, see also AbrB
- AcoR regulon, see also AcoR
- AdaA regulon, see also AdaA
- AdeR regulon, see also AdeR
- AdhR regulon, see also AdhR
- AhrC regulon, see also AhrC
- AlsR regulon, see also AlsR
- AnsR regulon, see also AnsR
- AraR regulon, see also AraR
- ArsR regulon, see also ArsR
- AscR regulon, see also AscR
- AseR regulon, see also AseR
- AzlB regulon, see also AzlB
- BceR regulon, see also BceR
- BirA regulon, see also BirA
- BkdR regulon, see also BkdR
- BltR regulon, see also BltR
- BmrR regulon, see also BmrR
- BsdA regulon, see also BsdA
- Btr regulon, see also Btr
- CatR regulon, see also CatR
- CcpA regulon, see also CcpA
- CcpC regulon, see also CcpC
- CcpN regulon, see also CcpN
- CggR regulon, see also CggR
- ChrS regulon, see also ChrS
- CitR regulon, see also CitR
- CitT regulon, see also CitT
- CodY regulon, see also CodY
- ComA regulon, see also ComA
- ComK regulon, see also ComK
- CsoR regulon, see also CsoR
- CssR regulon, see also CssR
- CtsR regulon, see also CtsR
- CymR regulon, see also CymR
- CysL regulon, see also CysL
- CzrA regulon, see also CzrA
- DegU regulon, see also DegU
- DeoR regulon, see also DeoR
- DesR regulon, see also DesR
- DnaA regulon, see also DnaA
- DtrR regulon, see also DtrR
- ExuR regulon, see also ExuR
- FadR regulon, see also FadR
- FapR regulon, see also FapR
- FatR regulon, see also FatR
- Fnr regulon, see also Fnr
- FrlR regulon, see also FrlR
- FruR regulon, see also FruR
- Fur regulon, see also Fur
- GabR regulon, see also GabR
- GamR regulon, see also GamR
- GbsR regulon, see also GbsR
- GerE regulon, see also GerE
- GerR regulon, see also GerR
- GlnL regulon, see also GlnL
- GlnR regulon, see also GlnR
- GltC regulon, see also GltC
- GltR regulon, see also GltR
- GlvR regulon, see also GlvR
- GmuR regulon, see also GmuR
- GntR regulon, see also GntR
- GutR regulon, see also GutR
- HrcA regulon, see also HrcA
- HxlR regulon, see also HxlR
- HypR regulon, see also HypR
- ImmR regulon, see also ImmR
- IolR regulon, see also IolR
- KdgR regulon, see also KdgR
- KipR regulon, see also KipR
- LacR regulon, see also LacR
- LevR regulon, see also LevR
- LexA regulon, see also LexA
- LiaR regulon, see also LiaR
- LicR regulon, see also LicR
- LmrA regulon, see also LmrA
- LutR regulon, see also LutR
- LytT regulon, see also LytT
- MalR regulon, see also MalR
- ManR regulon, see also ManR
- MdtR regulon, see also MdtR
- MgsR regulon, see also MgsR
- MhqR regulon, see also MhqR
- MntR regulon, see also MntR
- Mta regulon, see also Mta
- MtlR regulon, see also MtlR
- NadR regulon, see also NadR
- NagR regulon, see also NagR
- NatR regulon, see also NatR
- NrdR regulon, see also NrdR
- NsrR regulon, see also NsrR
- NtdR regulon, see also NtdR
- OhrR regulon, see also OhrR
- OpcR regulon, see also OpcR
- PadR regulon, see also PadR
- PchR regulon, see also YvmB
- PerR regulon, see also PerR
- PhoP regulon, see also PhoP
- PsdR regulon, see also PsdR
- PucR regulon, see also PucR
- PurR regulon, see also PurR
- PutR regulon, see also PutR
- QdoR regulon, see also QdoR
- RemA regulon, see also RemA
- ResD regulon, see also ResD
- Rex regulon, see also Rex
- RghR regulon, see also RghR
- RhaR regulon, see also RhaR
- RhgR regulon, see also RhgR
- RocR regulon, see also RocR
- Rok regulon, see also Rok
- RsfA regulon, see also RsfA
- SalA regulon, see also SalA
- ScoC regulon, see also ScoC
- SdpR regulon, see also SdpR
- SenS regulon, see also SenS
- SinR regulon, see also SinR
- SknR regulon, see also SknR
- SlrR regulon, see also SlrR
- Spo0A regulon, see also Spo0A
- SpoIIID regulon, see also SpoIIID
- SpoVT regulon, see also SpoVT
- Spx regulon, see also Spx
- TilS-HprT regulon, see also TilS, HprT
- ThrR regulon, see also ThrR
- TnrA regulon, see also TnrA
- TreR regulon, see also TreR
- WalR regulon, see also WalR
- Xre regulon, see also Xre
- XylR regulon, see also XylR
- YcbG regulon, see also YcbG
- YclJ regulon, see also YclJ
- YcnK regulon, see also YcnK
- YdfI regulon, see also YdfI
- YetL regulon, see also YetL
- YfhP regulon, see also YfhP
- YfiK regulon, see also YfiK
- YfmP regulon, see also YfmP
- YkrK regulon, see also YkrK
- YodB regulon, see also YodB
- YofA regulon, see also YofA
- YrkP regulon, see also YrkP
- YtrA regulon, see also YtrA
- YvrHb regulon, see also YvrHb
- YwbI regulon, see also YwbI
- YwcC regulon, see also YwcC
- YxdJ regulon, see also YxdJ
- Zur regulon, see also Zur
RNA switches
- A-box
- B12 riboswitch
- EAR riboswitch
- FMN-box
- G-box
- GlcT regulon, see also GlcT
- glmS ribozyme
- GlpP regulon, see also GlpP
- Gly-box
- HutP regulon, see also HutP
- L-box
- LicT regulon, see also LicT
- M-box
- preQ1 riboswitch
- PyrR regulon, see also PyrR
- RplT regulon, see also RplT
- SacT regulon, see also SacT
- SacY regulon, see also SacY
- S-box
- T-box
- Thi-box
- TRAP regulon, see also MtrB
- YdaO riboswitch
- YkkC riboswitch
- yybP-ykoY motif
- RNA switch/ other
RNases
Additional regulatory mechanisms
- BmrB regulon, see also BmrB
- CitB regulon, see also CitB
- ComN regulon, see also ComN
- CsrA regulon, see also CsrA
- FbpB regulon, see also FbpB
- fsrA regulon, see also fsrA
- Kre regulon, see also Kre
- MifM regulon, see also MifM
- as-bsrH regulon, see also as-bsrH
- as-yonT regulon, see also as-yonT
- ratA regulon, see also ratA
- RoxS regulon, see also RoxS
- SR1 regulon, see also sr1
- Stringent response
Key publications
Han Zhang, Yanbin Yin, Victor Olman, Ying Xu
Genomic arrangement of regulons in bacterial genomes.
PLoS One: 2012, 7(1);e29496
[PubMed:22235300]
[WorldCat.org]
[DOI]
(I p)
