Difference between revisions of "Regulons"

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Overview on the regulons in ''B. subtilis''
 
Overview on the regulons in ''B. subtilis''
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= [[Sigma factors]] =
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* [[SigB regulon]], see also [[SigB]]
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* [[SigD regulon]], see also [[SigD]]
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* [[SigE regulon]], see also [[SigE]]
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* [[SigF regulon]], see also [[SigF]]
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* [[SigG regulon]], see also [[SigG]]
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* [[SigH regulon]], see also [[SigH]]
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* [[SigI regulon]], see also [[SigI]]
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* [[SigK regulon]], see also [[SigK]]
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* [[SigL regulon]], see also [[SigL]]
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* [[SigM regulon]], see also [[SigM]]
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* [[SigV regulon]], see also [[SigV]]
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* [[SigW regulon]], see also [[SigW]]
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* [[SigX regulon]], see also [[SigX]]
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* [[SigY regulon]], see also [[SigY]]
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* [[Xpf regulon]], see also [[Xpf]]
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* [[YlaC regulon]], see also [[YlaC]]
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* [[SigO-RsoA regulon]], see also [[SigO]] and [[RsoA]]
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= DNA-binding regulators =
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* [[Abh regulon]], see also [[Abh]]
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* [[AbrB regulon]], see also [[AbrB]]
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* [[AcoR regulon]], see also [[AcoR]]
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* [[AdaA regulon]], see also [[AdaA]]
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* [[AdeR regulon]], see also [[AdeR]]
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* [[AdhR regulon]], see also [[AdhR]]
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* [[AhrC regulon]], see also [[AhrC]]
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* [[AlsR regulon]], see also [[AlsR]]
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* [[AnsR regulon]], see also [[AnsR]]
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* [[AraR regulon]], see also [[AraR]]
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* [[ArsR regulon]], see also [[ArsR]]
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* [[AscR regulon]], see also [[AscR]]
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* [[AseR regulon]], see also [[AseR]]
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* [[AzlB regulon]], see also [[AzlB]]
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* [[BceR regulon]], see also [[BceR]]
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* [[BirA regulon]], see also [[BirA]]
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* [[BkdR regulon]], see also [[BkdR]]
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* [[BltR regulon]], see also [[BltR]]
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* [[BmrR regulon]], see also [[BmrR]]
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* [[BsdA regulon]], see also [[BsdA]]
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* [[Btr regulon]], see also [[Btr]]
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* [[CatR regulon]], see also [[CatR]]
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* [[CcpA regulon]], see also [[CcpA]]
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* [[CcpC regulon]], see also [[CcpC]]
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* [[CcpN regulon]], see also [[CcpN]]
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* [[CggR regulon]], see also [[CggR]]
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* [[ChrS regulon]], see also [[ChrS]]
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* [[CitR regulon]], see also [[CitR]]
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* [[CitT regulon]], see also [[CitT]]
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* [[CodY regulon]], see also [[CodY]]
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* [[ComA regulon]], see also [[ComA]]
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* [[ComK regulon]], see also [[ComK]]
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* [[CsoR regulon]], see also [[CsoR]]
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* [[CssR regulon]], see also [[CssR]]
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* [[CtsR regulon]], see also [[CtsR]]
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* [[CymR regulon]], see also [[CymR]]
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* [[CysL regulon]], see also [[CysL]]
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* [[CzrA regulon]], see also [[CzrA]]
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* [[DegU regulon]], see also [[DegU]]
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* [[DeoR regulon]], see also [[DeoR]]
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* [[DesR regulon]], see also [[DesR]]
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* [[DnaA regulon]], see also [[DnaA]]
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* [[DtrR regulon]], see also [[DtrR]]
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* [[ExuR regulon]], see also [[ExuR]]
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* [[FadR regulon]], see also [[FadR]]
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* [[FapR regulon]], see also [[FapR]]
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* [[FatR regulon]], see also [[FatR]]
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* [[Fnr regulon]], see also [[Fnr]]
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* [[FrlR regulon]], see also [[FrlR]]
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* [[FruR regulon]], see also [[FruR]]
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* [[Fur regulon]], see also [[Fur]]
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* [[GabR regulon]], see also [[GabR]]
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* [[GamR regulon]], see also [[GamR]]
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* [[GbsR regulon]], see also [[GbsR]]
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* [[GerE regulon]], see also [[GerE]]
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* [[GerR regulon]], see also [[GerR]]
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* [[GlnL regulon]], see also [[GlnL]]
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* [[GlnR regulon]], see also [[GlnR]]
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* [[GltC regulon]], see also [[GltC]]
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* [[GltR regulon]], see also [[GltR]]
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* [[GlvR regulon]], see also [[GlvR]]
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* [[GmuR regulon]], see also [[GmuR]]
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* [[GntR regulon]], see also [[GntR]]
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* [[GutR regulon]], see also [[GutR]]
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* [[HrcA regulon]], see also [[HrcA]]
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* [[HxlR regulon]], see also [[HxlR]]
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* [[HypR regulon]], see also [[HypR]]
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* [[ImmR regulon]], see also [[ImmR]]
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* [[IolR regulon]], see also [[IolR]]
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* [[KdgR regulon]], see also [[KdgR]]
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* [[KipR regulon]], see also [[KipR]]
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* [[LacR regulon]], see also [[LacR]]
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* [[LevR regulon]], see also [[LevR]]
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* [[LexA regulon]], see also [[LexA]]
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* [[LiaR regulon]], see also [[LiaR]]
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* [[LicR regulon]], see also [[LicR]]
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* [[LmrA regulon]], see also [[LmrA]]
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* [[LutR regulon]], see also [[LutR]]
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* [[LytT regulon]], see also [[LytT]]
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* [[MalR regulon]], see also [[MalR]]
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* [[ManR regulon]], see also [[ManR]]
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* [[MdtR regulon]], see also [[MdtR]]
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* [[MgsR regulon]], see also [[MgsR]]
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* [[MhqR regulon]], see also [[MhqR]]
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* [[MntR regulon]], see also [[MntR]]
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* [[Mta regulon]], see also [[Mta]]
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* [[MtlR regulon]], see also [[MtlR]]
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* [[NadR regulon]], see also [[NadR]]
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* [[NagR regulon]], see also [[NagR]]
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* [[NatR regulon]], see also [[NatR]]
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* [[NrdR regulon]], see also [[NrdR]]
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* [[NsrR regulon]], see also [[NsrR]]
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* [[NtdR regulon]], see also [[NtdR]]
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* [[OhrR regulon]], see also [[OhrR]]
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* [[OpcR regulon]], see also [[OpcR]]
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* [[PadR regulon]], see also [[PadR]]
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* [[PchR regulon]], see also [[YvmB]]
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* [[PerR regulon]], see also [[PerR]]
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* [[PhoP regulon]], see also [[PhoP]]
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* [[PsdR regulon]], see also [[PsdR]]
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* [[PucR regulon]], see also [[PucR]]
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* [[PurR regulon]], see also [[PurR]]
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* [[PutR regulon]], see also [[PutR]]
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* [[QdoR regulon]], see also [[QdoR]]
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* [[RemA regulon]], see also [[RemA]]
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* [[ResD regulon]], see also [[ResD]]
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* [[Rex regulon]], see also [[Rex]]
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* [[RghR regulon]], see also [[RghR]]
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* [[RhaR regulon]], see also [[RhaR]]
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* [[RhgR regulon]], see also [[RhgR]]
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* [[RocR regulon]], see also [[RocR]]
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* [[Rok regulon]], see also [[Rok]]
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* [[RsfA regulon]], see also [[RsfA]]
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* [[SalA regulon]], see also [[SalA]]
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* [[ScoC regulon]], see also [[ScoC]]
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* [[SdpR regulon]], see also [[SdpR]]
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* [[SenS regulon]], see also [[SenS]]
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* [[SinR regulon]], see also [[SinR]]
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* [[SknR regulon]], see also [[SknR]]
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* [[SlrR regulon]], see also [[SlrR]]
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* [[Spo0A regulon]], see also [[Spo0A]]
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* [[SpoIIID regulon]], see also [[SpoIIID]]
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* [[SpoVT regulon]], see also [[SpoVT]]
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* [[Spx regulon]], see also [[Spx]]
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* [[TilS-HprT regulon]], see also [[TilS]], [[HprT]]
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* [[ThrR regulon]], see also [[ThrR]]
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* [[TnrA regulon]], see also [[TnrA]]
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* [[TreR regulon]], see also [[TreR]]
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* [[WalR regulon]], see also [[WalR]]
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* [[Xre regulon]], see also [[Xre]]
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* [[XylR regulon]], see also [[XylR]]
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* [[YcbG regulon]], see also [[YcbG]]
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* [[YclJ regulon]], see also [[YclJ]]
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* [[YcnK regulon]], see also [[YcnK]]
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* [[YdfI regulon]], see also [[YdfI]]
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* [[YetL regulon]], see also [[YetL]]
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* [[YfhP regulon]], see also [[YfhP]]
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* [[YfiK regulon]], see also [[YfiK]]
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* [[YfmP regulon]], see also [[YfmP]]
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* [[YkrK regulon]], see also [[YkrK]]
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* [[YodB regulon]], see also [[YodB]]
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* [[YofA regulon]], see also [[YofA]]
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* [[YrkP regulon]], see also [[YrkP]]
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* [[YtrA regulon]], see also [[YtrA]]
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* [[YvrHb regulon]], see also [[YvrHb]]
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* [[YwbI regulon]], see also [[YwbI]]
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* [[YwcC regulon]], see also [[YwcC]]
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* [[YxdJ regulon]], see also [[YxdJ]]
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* [[Zur regulon]], see also [[Zur]]
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= [[RNA switch|RNA switches]] =
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* [[A-box]]
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* [[B12 riboswitch]]
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* [[EAR riboswitch]]
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* [[FMN-box]]
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* [[G-box]]
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* [[GlcT regulon]], see also [[GlcT]]
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* [[glmS ribozyme]]
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* [[GlpP regulon]], see also [[GlpP]]
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* [[Gly-box]]
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* [[HutP regulon]], see also [[HutP]]
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* [[L-box]]
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* [[LicT regulon]], see also [[LicT]]
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* [[M-box]]
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* [[preQ1 riboswitch]]
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* [[PyrR regulon]], see also [[PyrR]]
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* [[RplT regulon]], see also [[RplT]]
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* [[SacT regulon]], see also [[SacT]]
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* [[SacY regulon]], see also [[SacY]]
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* [[S-box]]
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* [[T-box]]
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* [[Thi-box]]
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* [[TRAP regulon]], see also [[MtrB]]
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* [[YdaO riboswitch]]
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* [[YkkC riboswitch]]
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* [[yybP-ykoY motif]]
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* [[RNA switch/ other]]
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= [[RNases]] =
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* [[RNase III targets]]
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* [[RNase Y targets]]
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= Additional regulatory mechanisms =
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* [[BmrB regulon]], see also [[BmrB]]
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* [[CitB regulon]], see also [[CitB]]
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* [[ComN regulon]], see also [[ComN]]
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* [[CsrA regulon]], see also [[CsrA]]
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* [[FbpB regulon]], see also ''[[FbpB]]''
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* [[fsrA regulon]], see also ''[[fsrA]]''
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* [[Kre regulon]], see also [[Kre]]
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* [[MifM regulon]], see also [[MifM]]
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* [[as-bsrH regulon]], see also ''[[as-bsrH]]''
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* [[as-yonT regulon]], see also ''[[as-yonT]]''
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* [[ratA regulon]], see also ''[[ratA]]''
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* [[RoxS regulon]], see also [[RoxS]]
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* [[SR1 regulon]], see also [[sr1]]
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* [[Stringent response]]
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=Key publications=
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<pubmed> 22235300 </pubmed>

Latest revision as of 09:13, 22 December 2016

Overview on the regulons in B. subtilis

Sigma factors

DNA-binding regulators

RNA switches

RNases

Additional regulatory mechanisms

Key publications

Han Zhang, Yanbin Yin, Victor Olman, Ying Xu
Genomic arrangement of regulons in bacterial genomes.
PLoS One: 2012, 7(1);e29496
[PubMed:22235300] [WorldCat.org] [DOI] (I p)

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