Difference between revisions of "DNA repair/ recombination"
(→Genes in this functional category) |
(→Key reviews) |
||
| (29 intermediate revisions by the same user not shown) | |||
| Line 11: | Line 11: | ||
* 3.1.6. [[Genetics/ other]] | * 3.1.6. [[Genetics/ other]] | ||
|Related= | |Related= | ||
| − | + | * [[genetic competence]] | |
| + | * [[LexA regulon]] | ||
|}} | |}} | ||
== Genes in this functional category == | == Genes in this functional category == | ||
| + | === A/P endonucleases === | ||
| + | * ''[[exoA]]'' | ||
| + | * ''[[nfo]]'' | ||
| + | * ''[[nth]]'' | ||
| + | === Spore-encoded non-homologous end joining system === | ||
| + | * ''[[ligD]]'' | ||
| + | * ''[[ykoV]]'' | ||
| + | |||
| + | === Double strand breaks repair === | ||
| + | * ''[[recU]]'' | ||
| + | * ''[[ruvA]]'' | ||
| + | * ''[[ruvB]]'' | ||
| + | |||
| + | === Mismatch repair (MMR)=== | ||
| + | * ''[[dnaN]]'' | ||
| + | * ''[[mutL]]'' | ||
| + | * ''[[mutS]]'' | ||
| + | * ''[[walJ]]'' | ||
| + | |||
| + | === Oxidized guanine (GO) DNA repair system === | ||
| + | * ''[[mutM]]'' | ||
| + | * ''[[mutTA]]'' | ||
| + | * ''[[mutY]]'' | ||
| + | |||
| + | === Excision of prophages === | ||
| + | * ''[[spoIVCA]]'' | ||
| + | * ''[[sprA]]'' | ||
| + | * ''[[sprB]]'' | ||
| + | |||
| + | === Other proteins === | ||
* ''[[adaA]]'' | * ''[[adaA]]'' | ||
* ''[[adaB]]'' | * ''[[adaB]]'' | ||
| Line 23: | Line 54: | ||
* ''[[dinG]]'' | * ''[[dinG]]'' | ||
* ''[[dprA]]'' | * ''[[dprA]]'' | ||
| − | + | ||
* ''[[fin]]'' | * ''[[fin]]'' | ||
* ''[[helD]]'' | * ''[[helD]]'' | ||
| + | * ''[[hlpB]]'' | ||
* ''[[lexA]]'' | * ''[[lexA]]'' | ||
| + | |||
* ''[[lrpC]]'' | * ''[[lrpC]]'' | ||
* ''[[mfd]]'' | * ''[[mfd]]'' | ||
| − | + | ||
| − | |||
| − | |||
* ''[[mutSB]]'' | * ''[[mutSB]]'' | ||
* ''[[mutT]]'' | * ''[[mutT]]'' | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
* ''[[ogt]]'' | * ''[[ogt]]'' | ||
* ''[[pcrA]]'' | * ''[[pcrA]]'' | ||
| Line 50: | Line 78: | ||
* ''[[recF]]'' | * ''[[recF]]'' | ||
* ''[[recG]]'' | * ''[[recG]]'' | ||
| + | * ''[[recJ]]'' | ||
* ''[[recN]]'' | * ''[[recN]]'' | ||
* ''[[recO]]'' | * ''[[recO]]'' | ||
* ''[[recQ]]'' | * ''[[recQ]]'' | ||
* ''[[recR]]'' | * ''[[recR]]'' | ||
| − | + | ||
| − | * ''[[ | + | * ''[[recX]]'' |
| − | + | ||
* ''[[sbcC]]'' | * ''[[sbcC]]'' | ||
* ''[[sbcD]]'' | * ''[[sbcD]]'' | ||
| Line 62: | Line 91: | ||
* ''[[splA]]'' | * ''[[splA]]'' | ||
* ''[[splB]]'' | * ''[[splB]]'' | ||
| − | + | ||
* ''[[ssbA]]'' | * ''[[ssbA]]'' | ||
| + | * ''[[ssbB]]'' | ||
* ''[[ung]]'' | * ''[[ung]]'' | ||
* ''[[uvrA]]'' | * ''[[uvrA]]'' | ||
| Line 69: | Line 99: | ||
* ''[[uvrC]]'' | * ''[[uvrC]]'' | ||
* ''[[uvrX]]'' | * ''[[uvrX]]'' | ||
| + | |||
| + | * ''[[ywjD]]'' | ||
* ''[[ywqL]]'' | * ''[[ywqL]]'' | ||
| Line 82: | Line 114: | ||
* ''[[yobH]]'' | * ''[[yobH]]'' | ||
* ''[[yocI]]'' | * ''[[yocI]]'' | ||
| − | + | ||
* ''[[yorK]]'' | * ''[[yorK]]'' | ||
* ''[[yozK]]'' | * ''[[yozK]]'' | ||
* ''[[yprA]]'' | * ''[[yprA]]'' | ||
* ''[[ypvA]]'' | * ''[[ypvA]]'' | ||
| − | * ''[[ | + | * ''[[yrvN]]'' |
* ''[[yvcI]]'' | * ''[[yvcI]]'' | ||
| − | |||
==Key reviews== | ==Key reviews== | ||
| − | <pubmed>12045091 21517913</pubmed> | + | <pubmed>12045091 21517913 22749141 22933559 23046409 23202527 23380520 16132081 10961463 26343983 25731766 26354434</pubmed> |
| + | |||
| + | ==Key original publications== | ||
| + | <pubmed> 24670664 </pubmed> | ||
=Back to [[categories]]= | =Back to [[categories]]= | ||
Latest revision as of 16:29, 3 January 2017
| Parent categories |
|
| Neighbouring categories |
|
| Related categories | |
Contents
Genes in this functional category
A/P endonucleases
Spore-encoded non-homologous end joining system
Double strand breaks repair
Mismatch repair (MMR)
Oxidized guanine (GO) DNA repair system
Excision of prophages
Other proteins
Additional candidates (based on similarity)
Key reviews
Richard Fishel
Mismatch repair.
J Biol Chem: 2015, 290(44);26395-403
[PubMed:26354434]
[WorldCat.org]
[DOI]
(I p)
Justin S Lenhart, Monica C Pillon, Alba Guarné, Julie S Biteen, Lyle A Simmons
Mismatch repair in Gram-positive bacteria.
Res Microbiol: 2016, 167(1);4-12
[PubMed:26343983]
[WorldCat.org]
[DOI]
(I p)
Maria Spies, Richard Fishel
Mismatch repair during homologous and homeologous recombination.
Cold Spring Harb Perspect Biol: 2015, 7(3);a022657
[PubMed:25731766]
[WorldCat.org]
[DOI]
(I e)
Juan C Alonso, Paula P Cardenas, Humberto Sanchez, James Hejna, Yuki Suzuki, Kunio Takeyasu
Early steps of double-strand break repair in Bacillus subtilis.
DNA Repair (Amst): 2013, 12(3);162-76
[PubMed:23380520]
[WorldCat.org]
[DOI]
(I p)
Dale B Wigley
Bacterial DNA repair: recent insights into the mechanism of RecBCD, AddAB and AdnAB.
Nat Rev Microbiol: 2013, 11(1);9-13
[PubMed:23202527]
[WorldCat.org]
[DOI]
(I p)
Dawit Kidane, Silvia Ayora, Joann B Sweasy, Peter L Graumann, Juan C Alonso
The cell pole: the site of cross talk between the DNA uptake and genetic recombination machinery.
Crit Rev Biochem Mol Biol: 2012, 47(6);531-55
[PubMed:23046409]
[WorldCat.org]
[DOI]
(I p)
Justin S Lenhart, Jeremy W Schroeder, Brian W Walsh, Lyle A Simmons
DNA repair and genome maintenance in Bacillus subtilis.
Microbiol Mol Biol Rev: 2012, 76(3);530-64
[PubMed:22933559]
[WorldCat.org]
[DOI]
(I p)
Ann Ganesan, Graciela Spivak, Philip C Hanawalt
Transcription-coupled DNA repair in prokaryotes.
Prog Mol Biol Transl Sci: 2012, 110;25-40
[PubMed:22749141]
[WorldCat.org]
[DOI]
(I p)
Silvia Ayora, Begoña Carrasco, Paula P Cárdenas, Carolina E César, Cristina Cañas, Tribhuwan Yadav, Chiara Marchisone, Juan C Alonso
Double-strand break repair in bacteria: a view from Bacillus subtilis.
FEMS Microbiol Rev: 2011, 35(6);1055-81
[PubMed:21517913]
[WorldCat.org]
[DOI]
(I p)
Eduardo P C Rocha, Emmanuel Cornet, Bénédicte Michel
Comparative and evolutionary analysis of the bacterial homologous recombination systems.
PLoS Genet: 2005, 1(2);e15
[PubMed:16132081]
[WorldCat.org]
[DOI]
(P p)
Shelley L Lusetti, Michael M Cox
The bacterial RecA protein and the recombinational DNA repair of stalled replication forks.
Annu Rev Biochem: 2002, 71;71-100
[PubMed:12045091]
[WorldCat.org]
[DOI]
(P p)
S Fernández, S Ayora, J C Alonso
Bacillus subtilis homologous recombination: genes and products.
Res Microbiol: 2000, 151(6);481-6
[PubMed:10961463]
[WorldCat.org]
[DOI]
(P p)
Key original publications
