Difference between revisions of "SigB regulon"

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(→‎Important publications on the SigB regulon)
 
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{{RegulonTable|
 
{{RegulonTable|
 
Regulator=[[SigB]]
 
Regulator=[[SigB]]
 
}}
 
}}
  
−
= Genes in this regulon =
+
== The SigB regulon is induced by a variety of stresses including nutrient limitation, heat, ethanol, or low pressure. ==
 +
 
 +
= Related pages =
 +
* [[General stress proteins (controlled by SigB)]]
 +
* [[Stressosome]]
 +
 
 +
= Genes in this [[regulon]] =
 +
* [[S1136-1134]]
 
* ''[[aag]]''
 
* ''[[aag]]''
 
* ''[[aldY]]''
 
* ''[[aldY]]''
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* ''[[ctsR]]''
 
* ''[[ctsR]]''
 
* ''[[cypC]]''
 
* ''[[cypC]]''
−
* ''[[dacC]]''
 
 
* ''[[disA]]''
 
* ''[[disA]]''
−
* ''[[dnaG]]''
 
 
* ''[[dps]]''
 
* ''[[dps]]''
 
* ''[[era]]''
 
* ''[[era]]''
 
* ''[[gabD]]''
 
* ''[[gabD]]''
−
* ''[[galM]]''
 
 
* ''[[gsiB]]''
 
* ''[[gsiB]]''
 
* ''[[gspA]]''
 
* ''[[gspA]]''
 
* ''[[gtaB]]''
 
* ''[[gtaB]]''
 
* ''[[guaD]]''
 
* ''[[guaD]]''
 +
* ''[[hpf]]''
 
* ''[[iolW]]''
 
* ''[[iolW]]''
 
* ''[[ispD]]''
 
* ''[[ispD]]''
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* ''[[katE]]''
 
* ''[[katE]]''
 
* ''[[katX]]''
 
* ''[[katX]]''
−
* ''[[lexA]]''
 
 
* ''[[mcsA]]''
 
* ''[[mcsA]]''
 
* ''[[mcsB]]''
 
* ''[[mcsB]]''
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* ''[[nhaX]]''
 
* ''[[nhaX]]''
 
* ''[[ohrB]]''
 
* ''[[ohrB]]''
 +
* ''[[opuE]]''
 
* ''[[phoP]]''
 
* ''[[phoP]]''
 
* ''[[phoR]]''
 
* ''[[phoR]]''
 
* ''[[plsC]]''
 
* ''[[plsC]]''
 
* ''[[radA]]''
 
* ''[[radA]]''
−
* ''[[relA]]''
 
 
* ''[[rnr]]''
 
* ''[[rnr]]''
 +
* ''[[rpmEB]]''
 
* ''[[rsbRD]]''
 
* ''[[rsbRD]]''
 
* ''[[rsbV]]''
 
* ''[[rsbV]]''
 
* ''[[rsbW]]''
 
* ''[[rsbW]]''
 
* ''[[rsbX]]''
 
* ''[[rsbX]]''
−
* ''[[sigA]]''
 
 
* ''[[sigB]]''
 
* ''[[sigB]]''
 
* ''[[sodA]]''
 
* ''[[sodA]]''
 +
* ''[[spo0E]]''
 
* ''[[spoVC]]''
 
* ''[[spoVC]]''
 
* ''[[spx]]''
 
* ''[[spx]]''
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* ''[[yacL]]''
 
* ''[[yacL]]''
 
* ''[[ybyB]]''
 
* ''[[ybyB]]''
−
* ''[[ycbK]]''
 
 
* ''[[ycbP]]''
 
* ''[[ycbP]]''
 
* ''[[ycdF]]''
 
* ''[[ycdF]]''
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* ''[[ydaF]]''
 
* ''[[ydaF]]''
 
* ''[[ydaG]]''
 
* ''[[ydaG]]''
 +
* ''[[ydaJ]]-[[ydaK]]-[[ydaL]]-[[ydaM]]-[[ydaN]]''
 
* ''[[ydaP]]''
 
* ''[[ydaP]]''
 
* ''[[ydaS]]''
 
* ''[[ydaS]]''
 
* ''[[ydaT]]''
 
* ''[[ydaT]]''
 
* ''[[ydbD]]''
 
* ''[[ydbD]]''
−
* ''[[ydbP]]''
 
 
* ''[[ydeC]]''
 
* ''[[ydeC]]''
 
* ''[[ydhK]]''
 
* ''[[ydhK]]''
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* ''[[yflH]]''
 
* ''[[yflH]]''
 
* ''[[yflT]]''
 
* ''[[yflT]]''
−
* ''[[yfnI]]''
 
 
* ''[[ygxB]]''
 
* ''[[ygxB]]''
 
* ''[[yhcM]]''
 
* ''[[yhcM]]''
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* ''[[yocB]]''
 
* ''[[yocB]]''
 
* ''[[yocK]]''
 
* ''[[yocK]]''
−
* ''[[yotK]]''
 
 
* ''[[yoxB]]''
 
* ''[[yoxB]]''
 
* ''[[yoxC]]''
 
* ''[[yoxC]]''
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* ''[[yqhQ]]''
 
* ''[[yqhQ]]''
 
* ''[[yqjL]]''
 
* ''[[yqjL]]''
−
* ''[[yqxD]]''
 
 
* ''[[yraA]]''
 
* ''[[yraA]]''
−
* ''[[yrvI]]''
 
 
* ''[[ysdB]]''
 
* ''[[ysdB]]''
 
* ''[[ysnF]]''
 
* ''[[ysnF]]''
 
* ''[[ytaB]]''
 
* ''[[ytaB]]''
−
* ''[[ytiA]]''
+
 
 
* ''[[ytkL]]''
 
* ''[[ytkL]]''
 
* ''[[ytxG]]''
 
* ''[[ytxG]]''
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* ''[[yvgO]]''
 
* ''[[yvgO]]''
 
* ''[[yvrE]]''
 
* ''[[yvrE]]''
−
* ''[[yvyD]]''
+
 
 
* ''[[ywiE]]''
 
* ''[[ywiE]]''
 
* ''[[ywjC]]''
 
* ''[[ywjC]]''
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* ''[[yxbG]]''
 
* ''[[yxbG]]''
 
* ''[[yxiS]]''
 
* ''[[yxiS]]''
 +
* ''[[yxjI]]''
 
* ''[[yxjJ]]''
 
* ''[[yxjJ]]''
 
* ''[[yxkO]]''
 
* ''[[yxkO]]''
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* ''[[yxzF]]''
 
* ''[[yxzF]]''
 
* ''[[yycD]]''
 
* ''[[yycD]]''
 +
 +
==New members of the regulon==
 +
* ''[[yczO]]''
 +
* ''[[ydaC]]''
 +
* ''[[yebE]]''
 +
* ''[[yebG]]''
 +
* ''[[yflD]]''
 +
* ''[[yflB]]''
 +
* ''[[yisP]]''
 +
* ''[[ipi]]''
 +
* ''[[yjlB]]''
 +
* ''[[ykzN]]''
 +
* ''[[spo0E]]''
 +
* ''[[yktC]]''
 +
* ''[[ykzC]]''
 +
* ''[[rbfA]]''
 +
* ''[[ytkC]]''
 +
* ''[[ytiB]]''
 +
* ''[[menC]]''
 +
* ''[[menE]]''
 +
* ''[[yuzH]]''
 +
* ''[[yvbG]]''
 +
* ''[[yvzE]]''
 +
* ''[[ywsA]]''
 +
* ''[[ywjA]]''
 +
* ''[[yydC]]''
 +
* ''[[yyzG]]''
 +
* ''[[yyzH]]''
 +
* ''[[yybO]]''
 +
 +
= Important publications on the [[SigB]] [[regulon]] =
 +
<pubmed> 11544224, 11532142, 10482513, 10220166  22174379 24878601 26577401 27518094</pubmed>
 +
 +
= Back to [[regulons]]=

Latest revision as of 14:41, 28 October 2016

Regulator

SigB

The SigB regulon is induced by a variety of stresses including nutrient limitation, heat, ethanol, or low pressure.

Related pages

Genes in this regulon

New members of the regulon

Important publications on the SigB regulon

Wolfgang Schumann
Regulation of bacterial heat shock stimulons.
Cell Stress Chaperones: 2016, 21(6);959-968
[PubMed:27518094] [WorldCat.org] [DOI] (I p)

Mario L Arrieta-Ortiz, Christoph Hafemeister, Ashley Rose Bate, Timothy Chu, Alex Greenfield, Bentley Shuster, Samantha N Barry, Matthew Gallitto, Brian Liu, Thadeous Kacmarczyk, Francis Santoriello, Jie Chen, Christopher D A Rodrigues, Tsutomu Sato, David Z Rudner, Adam Driks, Richard Bonneau, Patrick Eichenberger
An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.
Mol Syst Biol: 2015, 11(11);839
[PubMed:26577401] [WorldCat.org] [DOI] (I e)

Samantha M Waters, José A Robles-Martínez, Wayne L Nicholson
Exposure of Bacillus subtilis to low pressure (5 kilopascals) induces several global regulons, including those involved in the SigB-mediated general stress response.
Appl Environ Microbiol: 2014, 80(16);4788-94
[PubMed:24878601] [WorldCat.org] [DOI] (I p)

Priyanka Nannapaneni, Falk Hertwig, Maren Depke, Michael Hecker, Ulrike Mäder, Uwe Völker, Leif Steil, Sacha A F T van Hijum
Defining the structure of the general stress regulon of Bacillus subtilis using targeted microarray analysis and random forest classification.
Microbiology (Reading): 2012, 158(Pt 3);696-707
[PubMed:22174379] [WorldCat.org] [DOI] (I p)

A Petersohn, M Brigulla, S Haas, J D Hoheisel, U Völker, M Hecker
Global analysis of the general stress response of Bacillus subtilis.
J Bacteriol: 2001, 183(19);5617-31
[PubMed:11544224] [WorldCat.org] [DOI] (P p)

C W Price, P Fawcett, H Cérémonie, N Su, C K Murphy, P Youngman
Genome-wide analysis of the general stress response in Bacillus subtilis.
Mol Microbiol: 2001, 41(4);757-74
[PubMed:11532142] [WorldCat.org] [DOI] (P p)

A Petersohn, J Bernhardt, U Gerth, D Höper, T Koburger, U Völker, M Hecker
Identification of sigma(B)-dependent genes in Bacillus subtilis using a promoter consensus-directed search and oligonucleotide hybridization.
J Bacteriol: 1999, 181(18);5718-24
[PubMed:10482513] [WorldCat.org] [DOI] (P p)

Anja Petersohn, Haike Antelmann, Ulf Gerth, Michael Hecker
Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis.
Microbiology (Reading): 1999, 145 ( Pt 4);869-880
[PubMed:10220166] [WorldCat.org] [DOI] (P p)


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