Difference between revisions of "NcRNA"
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* 6. [[Groups of genes]] | * 6. [[Groups of genes]] | ||
|Neighbours= | |Neighbours= | ||
| − | * 6.1. [[ | + | * 6.1. [[Essential genes]] |
| − | * 6.2. [[ | + | * 6.2. [[Membrane proteins]] |
| − | * 6.3. [[ | + | * 6.3. [[GTP-binding proteins]] |
| − | * 6.4. [[ | + | * 6.4. [[Phosphoproteins]] |
| − | * 6.5. [[ | + | * 6.5. [[Universally conserved proteins]] |
| − | * 6.6. [[ | + | * 6.6. [[Poorly characterized/ putative enzymes]] |
| − | * 6.7. [[ | + | * 6.7. [[Proteins of unknown function]] |
| − | * 6.8. [[ | + | * 6.8. [[Short peptides]] |
| − | * 6.9. [[ | + | * 6.9. [[ncRNA]] |
* 6.10. [[Pseudogenes]] | * 6.10. [[Pseudogenes]] | ||
| − | |||
| − | |||
|Related= | |Related= | ||
| − | + | * [[RNA switch]] | |
| + | * [[RNase]] | ||
|}} | |}} | ||
| + | |||
| + | __TOC__ | ||
| + | <br><br><br> | ||
| + | '''6S RNA''' | ||
| + | |||
| + | * ''[[bsrA]]'' | ||
| + | * ''[[bsrB]]'' | ||
| + | |||
| + | '''tmRNA''' | ||
| + | |||
| + | * ''[[ssrA]]'' | ||
| + | |||
| + | '''small cytoplasmatic RNA (protein secretion)''' | ||
| + | |||
| + | *''[[scr]]'' | ||
| + | |||
| + | '''RNA component of RNase P''' | ||
| + | |||
| + | * ''[[rnpB]]'' | ||
| + | |||
| + | '''regulatory RNAs''' | ||
| + | |||
| + | * ''[[fsrA]]'' | ||
| + | * ''[[roxS]]'' | ||
| + | * ''[[rrcM]]'' | ||
| + | * [[sr1]] | ||
| + | * [[SR4]] | ||
| + | * [[RnaC]] | ||
| + | |||
| + | '''antisense RNAs of toxin/antitoxin systems''' | ||
| + | * ''[[ratA]]'' | ||
| + | * ''[[as-bsrH]]'' | ||
| + | * ''[[as-yonT]]'' | ||
| + | * ''[[SR5]]'' | ||
| + | |||
| + | '''small RNAs with unknown functions''' | ||
| + | |||
| + | * ''[[bsrC]]'' | ||
| + | * ''[[bsrD]]'' | ||
| + | * ''[[bsrF]]'' | ||
| + | * ''[[bsrH]]'' | ||
| + | * ''[[bsrI]]'' | ||
| + | * ''[[csfG]]'' | ||
| + | * ''[[surA]]'' (for ''[[yndL]]'') | ||
| + | * ''[[surC]]'' | ||
| + | |||
| + | '''Antisense RNAs were predicted for the following genes:''' {{PubMed|20525796}} | ||
| + | * ''[[bglP]]'' | ||
| + | * ''[[comER]]'' | ||
| + | * ''[[ggaA]]'' | ||
| + | * ''[[jag]]'' | ||
| + | * ''[[leuA]]'' | ||
| + | * ''[[mbl]]'' | ||
| + | * ''[[mtlD]]'' | ||
| + | * ''[[mutS]]'' | ||
| + | * ''[[nadB]]'' | ||
| + | * ''[[ndoA]]'' | ||
| + | * ''[[opuBD]]'' | ||
| + | * ''[[sda]]'' | ||
| + | * ''[[sigA]]'' | ||
| + | * ''[[wprA]]'' | ||
| + | * ''[[yddR]]'' | ||
| + | * ''[[ydiF]]'' | ||
| + | * ''[[yfhD]]'' | ||
| + | * ''[[yndL]]'' (''[[surA]]'') | ||
| + | * ''[[yoeA]]'' | ||
| + | * ''[[yoqZ]]'' | ||
| + | * ''[[yqzJ]]'' | ||
| + | * ''[[ytoA]]'' | ||
| + | * ''[[ytoI]]'' | ||
| + | * ''[[ywfM]]'' | ||
| + | * ''[[ywqA]]'' | ||
| + | * ''[[yyaQ]]'' | ||
| + | |||
| + | '''Additional noncoding RNAs were predicted for the following intergenic regions:''' {{PubMed|20525796}} | ||
| + | * ''[[yqaJ]]''-''[[yqaI]]'' | ||
| + | * ''[[yqaO]]''-''[[yqaN]]'' | ||
| + | * ''[[yndN]]''-''[[lexA]]'' | ||
| + | * ''[[ydcO]]''-''[[ydcP]]'' | ||
| + | * ''[[yolA]]''-''[[yokL]]'' | ||
| + | * ''[[yokC]]''-''[[yokB]]'' | ||
| + | * ''[[pbpG]]''-''[[ywhD]]'' | ||
| + | * ''[[stoA]]''-''[[zosA]]'' | ||
| + | * ''[[yobI]]''-''[[yobJ]]'' | ||
| + | * ''[[vmlR]]''-''[[ydgF]]'' | ||
| + | * ''[[yrzI]]''-''[[yrhG]]'' | ||
| + | * ''[[yfmI]]''-''[[yfmG]]'' | ||
| + | * ''[[hxlR]]''-''[[srfAA]]'' | ||
| + | * ''[[mutL]]''-''[[ymzD]]'' | ||
| + | * ''[[mntA]]''-''[[menC]]'' | ||
| + | * ''[[yopM]]''-''[[yopL]]'' | ||
| + | * ''[[yizD]]''-''[[yjbH]]'' | ||
| + | * ''[[pps]]''-''[[xynA]]'' | ||
| + | * ''[[yqdB]]''-''[[yqbM]]'' | ||
| + | * ''[[yugI]]''-''[[alaT]]'' | ||
| + | * ''[[trxA]]''-''[[xsa]]'' | ||
| + | * ''[[ykwD]]''-''[[pbpH]]'' | ||
| + | * ''[[ymzA]]''-''[[nrdI]]'' | ||
| + | * ''[[yvcI]]''-''[[trxB]]'' | ||
| + | * ''[[glmM]]''-''[[glmS]]'' | ||
| + | * ''[[yhaZ]]''-''[[yhaX]]'' | ||
| + | * ''[[yneK]]''-''[[cotM]]'' | ||
| + | * ''[[trpS]]''-''[[oppA]]'' | ||
| + | * ''[[gerPA]]''-''[[yisI]]'' | ||
| + | |||
| + | ==Reviews== | ||
| + | <pubmed> 19239884 19207102 20525796 19859665 21646430 22827307 24576839 25808661 27784798</pubmed> | ||
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed>22383849</pubmed> | ||
| + | =Back to [[categories]]= | ||
Latest revision as of 15:40, 28 October 2016
| Parent category | |
| Neighbouring categories |
|
| Related categories | |
6S RNA
tmRNA
small cytoplasmatic RNA (protein secretion)
RNA component of RNase P
regulatory RNAs
antisense RNAs of toxin/antitoxin systems
small RNAs with unknown functions
Antisense RNAs were predicted for the following genes: PubMed
- bglP
- comER
- ggaA
- jag
- leuA
- mbl
- mtlD
- mutS
- nadB
- ndoA
- opuBD
- sda
- sigA
- wprA
- yddR
- ydiF
- yfhD
- yndL (surA)
- yoeA
- yoqZ
- yqzJ
- ytoA
- ytoI
- ywfM
- ywqA
- yyaQ
Additional noncoding RNAs were predicted for the following intergenic regions: PubMed
- yqaJ-yqaI
- yqaO-yqaN
- yndN-lexA
- ydcO-ydcP
- yolA-yokL
- yokC-yokB
- pbpG-ywhD
- stoA-zosA
- yobI-yobJ
- vmlR-ydgF
- yrzI-yrhG
- yfmI-yfmG
- hxlR-srfAA
- mutL-ymzD
- mntA-menC
- yopM-yopL
- yizD-yjbH
- pps-xynA
- yqdB-yqbM
- yugI-alaT
- trxA-xsa
- ykwD-pbpH
- ymzA-nrdI
- yvcI-trxB
- glmM-glmS
- yhaZ-yhaX
- yneK-cotM
- trpS-oppA
- gerPA-yisI
Reviews
Important original publications
