Difference between revisions of "BkdR"
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required for survival at low temperatures) | required for survival at low temperatures) | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24100 bkdR] |
required for survival at low temperatures) | required for survival at low temperatures) | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ptb]]'', ''[[yqzF]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ptb]]'', ''[[yqzF]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24100 Advanced_DNA] |
|- | |- | ||
|colspan="2" | '''Genetic context''' <br/> [[Image:bkdR_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:bkdR_context.gif]] | ||
Revision as of 13:14, 13 May 2013
| Gene name | bkdR |
| Synonyms | yqiR |
| Essential | no |
| Product | transcriptional activator (for SigL-dependent promoter)) |
| Function | regulation of branched-chain amino acid utilization,
required for survival at low temperatures) |
| Gene expression levels in SubtiExpress: bkdR
required for survival at low temperatures) | |
| Interactions involving this protein in SubtInteract: BkdR | |
| Metabolic function and regulation of this protein in SubtiPathways: Lipid synthesis | |
| MW, pI | 77 kDa, 6.237 |
| Gene length, protein length | 2076 bp, 692 aa |
| Immediate neighbours | ptb, yqzF |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
utilization of amino acids, transcription factors and their control
This gene is a member of the following regulons
The BkdR regulon:
The gene
Basic information
- Locus tag: BSU24100
Phenotypes of a mutant
The mutant is cold-sensitive PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions: BkdR-SigL (activation)
Database entries
- Structure:
- UniProt: P54529
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: bkdR PubMed
- Sigma factor:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
