Difference between revisions of "Sandbox"

From SubtiWiki
Jump to: navigation, search
Line 4: Line 4:
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''resB''
+
|''resC''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypxB ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypxC ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]  
Line 14: Line 14:
 
|style="background:#ABCDEF;" align="center"|'''Function''' || required for cytochrome c synthesis
 
|style="background:#ABCDEF;" align="center"|'''Function''' || required for cytochrome c synthesis
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 61 kDa, 9.474  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 39 kDa, 9.564  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1626 bp, 542 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1056 bp, 352 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[resC]]'', ''[[resA]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[resD]]'', ''[[resB]]''
 
|-
 
|-
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/resB_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/resC_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/resB_protein.txt Protein sequence]'''
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/resC_protein.txt Protein sequence]'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:resB_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:resC_context.gif]]
 
|-
 
|-
 
|}
 
|}
Line 45: Line 45:
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/resABCDE.html]
 
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/resABCDE.html]
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10532]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10533]
  
 
=== Additional information===
 
=== Additional information===

Revision as of 16:58, 9 March 2009

  • Description: write here

Gene name resC
Synonyms ypxC
Essential yes PubMed
Product
Function required for cytochrome c synthesis
MW, pI 39 kDa, 9.564
Gene length, protein length 1056 bp, 352 aa
Immediate neighbours resD, resB
Gene sequence (+200bp) Protein sequence
Genetic context
ResC context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

essential PubMed

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry:
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed