Difference between revisions of "OpuBD"
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
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= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| − | + | {{SubtiWiki regulon|[[GbsR regulon]]}}, | |
| + | {{SubtiWiki regulon|[[OpcR regulon]]}} | ||
=The gene= | =The gene= | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuBD_3459806_3460486_-1 opuBD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=opuBD_3459806_3460486_-1 opuBD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' [[SigA]] {{PubMed|10216873}} | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|10216873}} |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
** [[GbsR]]: transcription repression {{PubMed|22408163}} | ** [[GbsR]]: transcription repression {{PubMed|22408163}} | ||
| + | ** [[OpcR]]: transcription repression {{PubMed|23960087}} | ||
* '''Additional information:''' | * '''Additional information:''' | ||
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=References= | =References= | ||
| − | + | <pubmed>10092453,9925583,10216873, 21296969 20525796 22408163 23960087</pubmed> | |
| − | <pubmed>10092453,9925583,10216873, 21296969 20525796</pubmed> | ||
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 07:53, 22 August 2013
- Description: choline ABC transporter (membane protein)
| Gene name | opuBD |
| Synonyms | proZ |
| Essential | no |
| Product | choline ABC transporter (membane protein) |
| Function | compatible solute transport |
| Gene expression levels in SubtiExpress: opuBD | |
| Interactions involving this protein in SubtInteract: OpuBD | |
| Metabolic function and regulation of this protein in SubtiPathways: Stress | |
| MW, pI | 23 kDa, 10.06 |
| Gene length, protein length | 678 bp, 226 aa |
| Immediate neighbours | yvaQ, opuBC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, coping with hyper-osmotic stress, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU33700
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: CysTW subfamily (according to Swiss-Prot)
- Paralogous protein(s): OpuCD
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: cell membrane PubMed
Database entries
- Structure:
- UniProt: P39775
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
- An antisense RNA is predicted foropuBD PubMed
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
