Difference between revisions of "SigB"
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==Control of SigB activity by protein-protein interactions== | ==Control of SigB activity by protein-protein interactions== | ||
| − | <pubmed> 11377871, 12270815, 15312768, 8460143, 8682769, 8002610, 11591687, 7601843, </pubmed> | + | <pubmed> 11377871, 12270815, 15312768, 8460143, 8682769, 8002610, 11591687, 7601843, 17498739, 15342582, </pubmed> |
==Identification of the SigB regulon== | ==Identification of the SigB regulon== | ||
| Line 140: | Line 140: | ||
==Other publications== | ==Other publications== | ||
| − | <pubmed> 8655572,, 3123466, 10369900,3112122, 8468294,8458834, 13129942, 6784117, 12867438, 3100810, 8253681, 12486038, 8764398,3027048, 15342585,17575448 | + | <pubmed> 8655572,, 3123466, 10369900,3112122, 8468294,8458834, 13129942, 6784117, 12867438, 3100810, 8253681, 12486038, 8764398,3027048, 15342585,17575448, 17586624,,3016731,11902719,14651641,10503549,15205443,6405278, 10383961, 15805528 6790515 116131, 39767581 </pubmed> |
Revision as of 11:14, 7 July 2009
- Description: RNA polymerase sigma factor SigB
| Gene name | sigB |
| Synonyms | rpoF |
| Essential | no |
| Product | RNA polymerase sigma factor SigB |
| Function | general stress response |
| Metabolic function and regulation of this protein in SubtiPathways: Stress | |
| MW, pI | 29 kDa, 5.418 |
| Gene length, protein length | 792 bp, 264 aa |
| Immediate neighbours | rsbW, rsbX |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Locus tag: BSU04730
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: SigB subfamily (according to Swiss-Prot)
- Paralogous protein(s):
Genes/ operons controlled by SigB
csbB, ctc, gsiB, katE, lexA,licR, sfA, xpf, yaaH, ydeC, ytzE, yvaN, ywhH,
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
Database entries
- Structure:
- Swiss prot entry: P06574
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Bill Haldenwang, San Antonio, USA
- Chet Price, Davis, USA homepage
Your additional remarks
References
Reviews
Peter Zuber
Management of oxidative stress in Bacillus.
Annu Rev Microbiol: 2009, 63;575-97
[PubMed:19575568]
[WorldCat.org]
[DOI]
(I p)
Michael Hecker, Jan Pané-Farré, Uwe Völker
SigB-dependent general stress response in Bacillus subtilis and related gram-positive bacteria.
Annu Rev Microbiol: 2007, 61;215-36
[PubMed:18035607]
[WorldCat.org]
[DOI]
(P p)
M Hecker, U Völker
General stress response of Bacillus subtilis and other bacteria.
Adv Microb Physiol: 2001, 44;35-91
[PubMed:11407115]
[WorldCat.org]
[DOI]
(P p)
M Hecker, U Völker
Non-specific, general and multiple stress resistance of growth-restricted Bacillus subtilis cells by the expression of the sigmaB regulon.
Mol Microbiol: 1998, 29(5);1129-36
[PubMed:9767581]
[WorldCat.org]
[DOI]
(P p)
Control of SigB activity by protein-protein interactions
Identification of the SigB regulon
Other publications
Adam Reeves, Ulf Gerth, Uwe Völker, W G Haldenwang
ClpP modulates the activity of the Bacillus subtilis stress response transcription factor, sigmaB.
J Bacteriol: 2007, 189(17);6168-75
[PubMed:17586624]
[WorldCat.org]
[DOI]
(P p)
Noriko Suzuki, Naoki Takaya, Takayuki Hoshino, Akira Nakamura
Enhancement of a sigma(B)-dependent stress response in Bacillus subtilis by light via YtvA photoreceptor.
J Gen Appl Microbiol: 2007, 53(2);81-8
[PubMed:17575448]
[WorldCat.org]
[DOI]
(P p)
Dirk Höper, Uwe Völker, Michael Hecker
Comprehensive characterization of the contribution of individual SigB-dependent general stress genes to stress resistance of Bacillus subtilis.
J Bacteriol: 2005, 187(8);2810-26
[PubMed:15805528]
[WorldCat.org]
[DOI]
(P p)
Gudrun Holtmann, Matthias Brigulla, Leif Steil, Alexandra Schütz, Karsta Barnekow, Uwe Völker, Erhard Bremer
RsbV-independent induction of the SigB-dependent general stress regulon of Bacillus subtilis during growth at high temperature.
J Bacteriol: 2004, 186(18);6150-8
[PubMed:15342585]
[WorldCat.org]
[DOI]
(P p)
Karen Carniol, Tae-Jong Kim, Chester W Price, Richard Losick
Insulation of the sigmaF regulatory system in Bacillus subtilis.
J Bacteriol: 2004, 186(13);4390-4
[PubMed:15205443]
[WorldCat.org]
[DOI]
(P p)
Thorsten Mascher, Neil G Margulis, Tao Wang, Rick W Ye, John D Helmann
Cell wall stress responses in Bacillus subtilis: the regulatory network of the bacitracin stimulon.
Mol Microbiol: 2003, 50(5);1591-604
[PubMed:14651641]
[WorldCat.org]
[DOI]
(P p)
Shuyu Zhang, W G Haldenwang
RelA is a component of the nutritional stress activation pathway of the Bacillus subtilis transcription factor sigma B.
J Bacteriol: 2003, 185(19);5714-21
[PubMed:13129942]
[WorldCat.org]
[DOI]
(P p)
Matthias Brigulla, Tamara Hoffmann, Andrea Krisp, Andrea Völker, Erhard Bremer, Uwe Völker
Chill induction of the SigB-dependent general stress response in Bacillus subtilis and its contribution to low-temperature adaptation.
J Bacteriol: 2003, 185(15);4305-14
[PubMed:12867438]
[WorldCat.org]
[DOI]
(P p)
Claudia Rollenhagen, Haike Antelmann, Janine Kirstein, Olivier Delumeau, Michael Hecker, Michael D Yudkin
Binding of sigma(A) and sigma(B) to core RNA polymerase after environmental stress in Bacillus subtilis.
J Bacteriol: 2003, 185(1);35-40
[PubMed:12486038]
[WorldCat.org]
[DOI]
(P p)
A Petersohn, S Engelmann, P Setlow, M Hecker
The katX gene of Bacillus subtilis is under dual control of sigmaB and sigmaF.
Mol Gen Genet: 1999, 262(1);173-9
[PubMed:10503549]
[WorldCat.org]
[DOI]
(P p)
U Völker, B Maul, M Hecker
Expression of the sigmaB-dependent general stress regulon confers multiple stress resistance in Bacillus subtilis.
J Bacteriol: 1999, 181(13);3942-8
[PubMed:10383961]
[WorldCat.org]
[DOI]
(P p)
T Schweder, A Kolyschkow, U Völker, M Hecker
Analysis of the expression and function of the sigmaB-dependent general stress regulon of Bacillus subtilis during slow growth.
Arch Microbiol: 1999, 171(6);439-43
[PubMed:10369900]
[WorldCat.org]
[DOI]
(P p)
C von Blohn, B Kempf, R M Kappes, E Bremer
Osmostress response in Bacillus subtilis: characterization of a proline uptake system (OpuE) regulated by high osmolarity and the alternative transcription factor sigma B.
Mol Microbiol: 1997, 25(1);175-87
[PubMed:11902719]
[WorldCat.org]
[DOI]
(P p)
S Alper, A Dufour, D A Garsin, L Duncan, R Losick
Role of adenosine nucleotides in the regulation of a stress-response transcription factor in Bacillus subtilis.
J Mol Biol: 1996, 260(2);165-77
[PubMed:8764398]
[WorldCat.org]
[DOI]
(P p)
A R Redfield, C W Price
General stress transcription factor sigmaB of Bacillus subtilis is a stable protein.
J Bacteriol: 1996, 178(12);3668-70
[PubMed:8655572]
[WorldCat.org]
[DOI]
(P p)
S A Boylan, A R Redfield, M S Brody, C W Price
Stress-induced activation of the sigma B transcription factor of Bacillus subtilis.
J Bacteriol: 1993, 175(24);7931-7
[PubMed:8253681]
[WorldCat.org]
[DOI]
(P p)
A K Benson, W G Haldenwang
Regulation of sigma B levels and activity in Bacillus subtilis.
J Bacteriol: 1993, 175(8);2347-56
[PubMed:8468294]
[WorldCat.org]
[DOI]
(P p)
A K Benson, W G Haldenwang
The sigma B-dependent promoter of the Bacillus subtilis sigB operon is induced by heat shock.
J Bacteriol: 1993, 175(7);1929-35
[PubMed:8458834]
[WorldCat.org]
[DOI]
(P p)
C Ray, M Igo, W Shafer, R Losick, C P Moran
Suppression of ctc promoter mutations in Bacillus subtilis.
J Bacteriol: 1988, 170(2);900-7
[PubMed:3123466]
[WorldCat.org]
[DOI]
(P p)
M Igo, M Lampe, C Ray, W Schafer, C P Moran, R Losick
Genetic studies of a secondary RNA polymerase sigma factor in Bacillus subtilis.
J Bacteriol: 1987, 169(8);3464-9
[PubMed:3112122]
[WorldCat.org]
[DOI]
(P p)
M L Duncan, S S Kalman, S M Thomas, C W Price
Gene encoding the 37,000-dalton minor sigma factor of Bacillus subtilis RNA polymerase: isolation, nucleotide sequence, chromosomal locus, and cryptic function.
J Bacteriol: 1987, 169(2);771-8
[PubMed:3027048]
[WorldCat.org]
[DOI]
(P p)
M M Igo, R Losick
Regulation of a promoter that is utilized by minor forms of RNA polymerase holoenzyme in Bacillus subtilis.
J Mol Biol: 1986, 191(4);615-24
[PubMed:3100810]
[WorldCat.org]
[DOI]
(P p)
C Binnie, M Lampe, R Losick
Gene encoding the sigma 37 species of RNA polymerase sigma factor from Bacillus subtilis.
Proc Natl Acad Sci U S A: 1986, 83(16);5943-7
[PubMed:3016731]
[WorldCat.org]
[DOI]
(P p)
W C Johnson, C P Moran, R Losick
Two RNA polymerase sigma factors from Bacillus subtilis discriminate between overlapping promoters for a developmentally regulated gene.
Nature: 1983, 302(5911);800-4
[PubMed:6405278]
[WorldCat.org]
[DOI]
(P p)
J F Ollington, W G Haldenwang, T V Huynh, R Losick
Developmentally regulated transcription in a cloned segment of the Bacillus subtilis chromosome.
J Bacteriol: 1981, 147(2);432-42
[PubMed:6790515]
[WorldCat.org]
[DOI]
(P p)
W G Haldenwang, R Losick
Novel RNA polymerase sigma factor from Bacillus subtilis.
Proc Natl Acad Sci U S A: 1980, 77(12);7000-4
[PubMed:6784117]
[WorldCat.org]
[DOI]
(P p)
W G Haldenwang, R Losick
A modified RNA polymerase transcribes a cloned gene under sporulation control in Bacillus subtilis.
Nature: 1979, 282(5736);256-60
[PubMed:116131]
[WorldCat.org]
[DOI]
(P p)
