Difference between revisions of "YtvA"
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU30340 ytvA] | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU30340 ytvA] | ||
| + | |- | ||
| + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/YtvA YtvA] | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 4.69 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 4.69 | ||
| Line 64: | Line 66: | ||
* '''Catalyzed reaction/ biological activity:''' | * '''Catalyzed reaction/ biological activity:''' | ||
| − | + | ** mediates light-dependent stimulation of [[RsbT]] kinase activity {{PubMed|23416074}} | |
* '''Protein family:''' | * '''Protein family:''' | ||
| Line 86: | Line 88: | ||
** [[YtvA]]-[[RsbRA]] {{PubMed|11157946}} | ** [[YtvA]]-[[RsbRA]] {{PubMed|11157946}} | ||
** [[YtvA]]-[[RsbRD]] {{PubMed|11157946}} | ** [[YtvA]]-[[RsbRD]] {{PubMed|11157946}} | ||
| + | ** part of the [[stressosome]] {{PubMed|23416074}} | ||
* '''[[Localization]]:''' | * '''[[Localization]]:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytvA_3106210_3106995_1 ytvA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ytvA_3106210_3106995_1 ytvA] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
| Line 145: | Line 148: | ||
==Original publications== | ==Original publications== | ||
'''Additional publications:''' {{PubMed|21259411,21388385,21410163,21851109,22287516}} | '''Additional publications:''' {{PubMed|21259411,21388385,21410163,21851109,22287516}} | ||
| − | <pubmed> 19581299 16923906,17575448, 17764689, 17443319 17200735 16923909 16797012 16022561 15339223 11964249 11157946 19891470 20062844 19783626 20800068 22247770 23047813</pubmed> | + | <pubmed> 19581299 16923906,17575448, 17764689, 17443319 17200735 16923909 16797012 16022561 15339223 11964249 11157946 19891470 20062844 19783626 20800068 22247770 23047813 23416074 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 13:39, 19 February 2013
- Description: blue light sensor, positive regulation of SigB activity under conditions of blue light
| Gene name | ytvA |
| Synonyms | |
| Essential | no |
| Product | blue light receptor, flavoprotein |
| Function | control of SigB activity |
| Gene expression levels in SubtiExpress: ytvA | |
| Interactions involving this protein in SubtInteract: YtvA | |
| MW, pI | 29 kDa, 4.69 |
| Gene length, protein length | 783 bp, 261 aa |
| Immediate neighbours | ytvB, yttB |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
sigma factors and their control
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU30340
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
Extended information on the protein
- Kinetic information:
- Domains: LOV domain, STAS domain
- Modification:
- Cofactor(s): FMN
- Effectors of protein activity:
Database entries
- UniProt: O34627
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
- Chet Price, Davis, USA homepage
Your additional remarks
References
Reviews
Additional reviews: PubMed
Original publications
Additional publications: PubMed
