Difference between revisions of "YjmC"

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* '''Description:''' unknown, may be involved in galacturonate utilization <br/><br/>
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU12320 yjmC]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 5.669   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 5.669   

Revision as of 08:05, 7 August 2012


Gene name yjmC
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: yjmC
MW, pI 36 kDa, 5.669
Gene length, protein length 1011 bp, 337 aa
Immediate neighbours yjmB, yjmD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
YjmC context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YjmC expression.png
























Categories containing this gene/protein

utilization of specific carbon sources, sporulation proteins

This gene is a member of the following regulons

CcpA regulon, ExuR regulon, SigE regulon

The gene

Basic information

  • Locus tag: BSU12320

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family: LDH2/MDH2 oxidoreductase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

The gene is annotated in KEGG as an ortholog of malate dehydrogenase EC 1.1.1.37. but it is marked as “uncharacterized oxidoreductase” (EC 1.1.1.-) in Swiss-Prot. In MetaCyc it is marked as “similar to malate dehydrogenase”. As the paper by Mekjian et al. PubMed suggests this gene is more likely to be involved in the glucuronate pathway (for which EC 1.1.1.37 is not a member), no literature/experimental evidence supporting the annotation is available. PubMed

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References