YtrE

• Description: ABC transporter (ATP-binding protein)
  
  

Gene name	ytrE
Synonyms
Essential	no
Product	ABC transporter (ATP-binding protein)
Function	unknown
Gene expression levels in SubtiExpress: ytrE
Interactions involving this protein in SubtInteract: YtrE
Metabolic function and regulation of this protein in SubtiPathways: ytrE
MW, pI	25 kDa, 5.98
Gene length, protein length	693 bp, 231 aa
Immediate neighbours	ytrF, ytrD
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

ABC transporters, cold stress proteins, membrane proteins

This gene is a member of the following regulons

YtrA regulon

The gene

Basic information

• Locus tag: BSU30420

Database entries

• BsubCyc: BSU30420

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity:

• Protein family: ABC transporter family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:
  • (YtrB-YtrE)-(YtrC-YtrD)-YtrF PubMed

• Localization: cell membrane (via YtrC-YtrD) PubMed

Database entries

• BsubCyc: BSU30420

• Structure:

• UniProt: O34392

• KEGG entry: [2]

• E.C. number:

Expression and regulation

• Operon: ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF PubMed

• Expression browser: ytrE PubMed

• Sigma factor: SigA PubMed

• Regulation:
  • induced by ramoplanin (YtrA) PubMed
  • expressed early in the stationary phase PubMed
  • induced by cold shock (6-fold) PubMed
  • induced by antibiotics interfering with membrane-bound steps of cell wall biosynthesis PubMed

• Regulatory mechanism:
  • YtrA: transcription repression PubMed

• Additional information:
  • number of protein molecules per cell (minimal medium with glucose and ammonium): 143 PubMed
  • number of protein molecules per cell (complex medium with amino acids, without glucose): 306 PubMed

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Additional publications: PubMed