Difference between revisions of "Sandbox"
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| − | * '''Description:''' | + | * '''Description:''' RNA polymerase sporulation forespore-specific (late) [[sigma factor]] SigG <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''sigG'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''spoIIIG '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || RNA polymerase sporulation forespore-specific (late) [[sigma factor]] SigG |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || transcription of sporulation genes (late forespore) |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 5.496 |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 780 bp, 260 aa |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sigE]]'', ''[[ylmA]]'' |
|- | |- | ||
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein''' | |colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein''' | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:sigG_context.gif]] |
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div> | ||
|- | |- | ||
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=== Database entries === | === Database entries === | ||
| − | * '''DBTBS entry:''' | + | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoIIGA-sigE-sigG.html] |
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10236] |
=== Additional information=== | === Additional information=== | ||
| Line 57: | Line 57: | ||
* '''Paralogous protein(s):''' | * '''Paralogous protein(s):''' | ||
| + | |||
| + | === Genes controlled by SigG === | ||
| + | |||
| + | ''[[dacF]]-[[spoIIAA]]-[[spoIIAB]]-[[sigF]]'', ''[[sigG]]'', ''[[pbpF]], [[pbpG]]'', ''[[spoVAA]]-[[spoVAB]]-[[spoVAC]]-[[spoVAD]]-[[spoVAE]]-[[spoVAF]]-[[lysA]]'', ''[[sleB]]-[[ypeB]]'', ''[[sspF]]'', ''[[ybaK]]-[[cwlD]]'', ''[[sspL]]'' | ||
=== Extended information on the protein === | === Extended information on the protein === | ||
| Line 80: | Line 84: | ||
* '''Swiss prot entry:''' | * '''Swiss prot entry:''' | ||
| − | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+ | + | * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU15330] |
* '''E.C. number:''' | * '''E.C. number:''' | ||
| Line 88: | Line 92: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[spoIIGA]]-[[sigE]]-[[sigG]]'' |
| + | ''[[sigG]]'' | ||
| − | * '''[[Sigma factor]]:''' | + | * '''[[Sigma factor]]:''' ''[[spoIIGA]]'': [[SigA]], ''[[sigG]]'': [[SigF]], [[SigG]] |
| − | * '''Regulation:''' | + | * '''Regulation:''' spoIIGA: expressed early during sporulation ([[Spo0A]]) |
| + | ''[[sigG]]'': expressed during sporulation | ||
| − | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' activated by [[Spo0A]], repression by [[SinR]] |
| − | * '''Additional information:''' | + | * '''Additional information:''' |
=Biological materials = | =Biological materials = | ||
Revision as of 19:56, 15 April 2009
- Description: RNA polymerase sporulation forespore-specific (late) sigma factor SigG
| Gene name | sigG |
| Synonyms | spoIIIG |
| Essential | no |
| Product | RNA polymerase sporulation forespore-specific (late) sigma factor SigG |
| Function | transcription of sporulation genes (late forespore) |
| MW, pI | 29 kDa, 5.496 |
| Gene length, protein length | 780 bp, 260 aa |
| Immediate neighbours | sigE, ylmA |
| Hier soll was neues rein | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Genes controlled by SigG
dacF-spoIIAA-spoIIAB-sigF, sigG, pbpF, pbpG, spoVAA-spoVAB-spoVAC-spoVAD-spoVAE-spoVAF-lysA, sleB-ypeB, sspF, ybaK-cwlD, sspL
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation: spoIIGA: expressed early during sporulation (Spo0A)
sigG: expressed during sporulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
