Difference between revisions of "Sandbox"

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* '''Description:''' control of cell shape and elongation <br/><br/>
+
* '''Description:''' Spx-dependent FMN-containing NADPH-linked nitro/flavin reductase, stress protein <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
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|''rodA''
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|''nfrA''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywcF, ipa-42d ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ywcG, ipa-43d ''
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || SEDS protein
+
|style="background:#ABCDEF;" align="center"| '''Product''' || FMN-containing NADPH-linked nitro/flavin reductase
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"|'''Function''' || control of cell shape and elongation
+
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.759  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 28 kDa, 5.732  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1179 bp, 393 aa  
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 747 bp, 249 aa  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[nfrA]]'', ''[[ywcE]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ywcH]]'', ''[[rodA]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|-
 
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:rodA_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:nfrA_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
−
 
−
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 
  
 
=== Database entries ===
 
=== Database entries ===
  
−
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rodA.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nfrA-ywcH.html]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10588]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10589]
  
 
=== Additional information===
 
=== Additional information===
Line 56: Line 54:
 
* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
  
−
* '''Protein family:''' SEDS proteins (shape, elongation, division, and sporulation)
+
* '''Protein family:'''
  
−
* '''Paralogous protein(s):''' [[FtsW]], [[SpoVE]]
+
* '''Paralogous protein(s):'''
  
 
=== Extended information on the protein ===
 
=== Extended information on the protein ===
Line 82: Line 80:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
−
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU38120]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU38110]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''
Line 90: Line 88:
 
=Expression and regulation=
 
=Expression and regulation=
  
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* '''Operon:'''  
+
* '''Operon:''' ''[[nfrA]]-[[ywcH]]''
  
−
* '''[[Sigma factor]]:''' [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 Pubmed]
+
* '''[[Sigma factor]]:''' [[SigA]], [[SigD]]
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 120: Line 118:
 
=References=
 
=References=
  
−
# Henriques AO, Glaser P, Piggot PJ, Moran CP Jr. (1998) Control of cell shape and elongation by the rodA gene in Bacillus subtilis. ''Mol Microbiol.'' '''Apr;28(2):''' 235-47. [http://www.ncbi.nlm.nih.gov/sites/entrez/9622350 PubMed]
 
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 17:07, 15 April 2009

  • Description: Spx-dependent FMN-containing NADPH-linked nitro/flavin reductase, stress protein

Gene name nfrA
Synonyms ywcG, ipa-43d
Essential no
Product FMN-containing NADPH-linked nitro/flavin reductase
Function unknown
MW, pI 28 kDa, 5.732
Gene length, protein length 747 bp, 249 aa
Immediate neighbours ywcH, rodA
Hier soll was neues rein
Genetic context
NfrA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
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