Difference between revisions of "Sandbox"
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| − | * '''Description:''' | + | * '''Description:''' unknown <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
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|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''yaaB'' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| Line 14: | Line 14: | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Essential''' || | + | |style="background:#ABCDEF;" align="center"| '''Essential''' || no |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || unknown |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || unknown |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 5 kDa, 8.796 |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 156 bp, 52 aa |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[recF]]'', ''[[gyrB]]'' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| Line 40: | Line 40: | ||
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-goettingen.de/ | + | |-goettingen.de/yaaB_nucleotide.txt Gene sequence (+200bp) ]''' |
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-goettingen.de/ | + | |-goettingen.de/yaaB_protein.txt Protein sequence]''' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:yaaB_context.gif]].* |
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|-|context.gif]].* | |-|context.gif]].* | ||
| Line 76: | Line 76: | ||
|-gyrB.html] | |-gyrB.html] | ||
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10069] |
=== Additional information=== | === Additional information=== | ||
| Line 115: | Line 115: | ||
* '''KEGG entry:''' [http://www.genome.jp/dbgetcontext.gif]].* | * '''KEGG entry:''' [http://www.genome.jp/dbgetcontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-bin/www_bget?bsu+ | + | |-bin/www_bget?bsu+BSU00050] |
* '''E.C. number:''' | * '''E.C. number:''' | ||
Revision as of 10:32, 23 March 2009
- Description: unknown
| context.gif]].*
this image is kindly was kindly provided by SubtiList
| ||
| Gene name | yaaB | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Synonyms | context.gif]].*
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| |
| Essential | no | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Product | unknown | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Function | unknown | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| MW, pI | 5 kDa, 8.796 | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Gene length, protein length | 156 bp, 52 aa | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Immediate neighbours | recF, gyrB | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| [1]].*
this image is kindly was kindly provided by SubtiList
| ||
| [2]].*
this image is kindly was kindly provided by SubtiList
| ||
| context.gif]].*
this image is kindly was kindly provided by SubtiList
| ||
Genetic context  .*
this image is kindly was kindly provided by SubtiList
| ||
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
Database entries
- DBTBS entry: [3]].*
this image is kindly was kindly provided by SubtiList
|-recFcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-yaaBcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-gyrB.html]
- SubtiList entry: [4]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: [5]].*
this image is kindly was kindly provided by SubtiList
|-bin/www_bget?bsu+BSU00050]
- E.C. number:
Additional information
Expression and regulation
- Operon: yaaAcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-recFcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-yaaBcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-gyrB PubMed
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- twocontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
- Ogasawara et al. (1985) Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.Nucl. Acids Res. 11: 2267context.gif]].*
![[1]](http://subtiwiki.unicontext.gif){kind=link}
![[3]](http://dbtbs.hgc.jp/COG/prom/yaaAcontext.gif){kind=link}
![[5]](http://www.genome.jp/dbgetcontext.gif){kind=link}