Revision as of 10:32, 23 March 2009

Description: unknown

this image is kindly was kindly provided by SubtiList

context.gif]].* this image is kindly was kindly provided by SubtiList
Gene name	yaaA	context.gif]].* this image is kindly was kindly provided by SubtiList
Synonyms		context.gif]].* this image is kindly was kindly provided by SubtiList
Essential		context.gif]].* this image is kindly was kindly provided by SubtiList
Product	unknown	context.gif]].* this image is kindly was kindly provided by SubtiList
Function	unknown	context.gif]].* this image is kindly was kindly provided by SubtiList
MW, pI	7 kDa, 4.332	context.gif]].* this image is kindly was kindly provided by SubtiList
Gene length, protein length	213 bp, 71 aa	context.gif]].* this image is kindly was kindly provided by SubtiList
Immediate neighbours	dnaN, recF	context.gif]].* this image is kindly was kindly provided by SubtiList
[1]].* this image is kindly was kindly provided by SubtiList
[2]].* this image is kindly was kindly provided by SubtiList
context.gif]].* this image is kindly was kindly provided by SubtiList
Genetic context .* this image is kindly was kindly provided by SubtiList

The gene

Basic information

Coordinates:

Phenotypes of a mutant

Database entries

DBTBS entry: [3]].*

this image is kindly was kindly provided by SubtiList

|-recFcontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-yaaBcontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-gyrB.html]

SubtiList entry: [4]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:

Protein family:

Paralogous protein(s):

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:

Localization:

Database entries

Structure:

Swiss prot entry:

KEGG entry: [5]].*

this image is kindly was kindly provided by SubtiList

|-bin/www_bget?bsu+BSU00030]

E.C. number:

Additional information

Expression and regulation

Operon: yaaAcontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-recFcontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-yaaBcontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-gyrB PubMed

Sigma factor: SigA PubMed

Regulation:

Regulatory mechanism:

Additional information:

Biological materials

Mutant:

Expression vector:

lacZ fusion:

GFP fusion:

twocontext.gif]].*

this image is kindly was kindly provided by SubtiList

|-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

Ogasawara et al. (1985) Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.Nucl. Acids Res. 11: 2267context.gif]].*

this image is kindly was kindly provided by SubtiList

|-2279. PubMed

@@ Line 1: / Line 1: @@
-* '''Description:''' DNA polymerase  III (gamma and tau subunits) <br/><br/>
+* '''Description:''' unknown <br/><br/>
 {| align="right" border="1" cellpadding="2"
@@ Line 6: / Line 6: @@
   |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''dnaN''
+|''yaaA''
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dnaG, dnaK ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
+|style="background:#ABCDEF;" align="center"| '''Essential''' ||
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || DNA polymerase  III (gamma and tau subunits)
+|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || DNA replication
+|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.718
+|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 7 kDa, 4.332
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1134 bp, 378 aa
+|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 213 bp, 71 aa
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaA]]'', ''[[yaaA]]''
+|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaN]]'', ''[[recF]]''
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
@@ Line 40: / Line 40: @@
 |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
-  |-goettingen.de/dnaN_nucleotide.txt     Gene sequence      (+200bp)   ]'''
+  |-goettingen.de/yaaA_nucleotide.txt     Gene sequence      (+200bp)   ]'''
 |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
-  |-goettingen.de/dnaN_protein.txt Protein sequence]'''
+  |-goettingen.de/yaaA_protein.txt Protein sequence]'''
 |context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-
-|colspan="2" | '''Genetic context''' <br/> [[Image:dnaN_context.gif]].*
+|colspan="2" | '''Genetic context''' <br/> [[Image:yaaA_context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-|context.gif]].*
@@ Line 65: / Line 65: @@
 ===Phenotypes of a mutant ===
-essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
 === Database entries ===
-* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaAN.html]
+* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yaaAcontext.gif]].*
+ <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
+ |-recFcontext.gif]].*
+ <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
+ |-yaaBcontext.gif]].*
+ <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
+ |-gyrB.html]
-* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10066]
+* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10067]
 === Additional information===
@@ Line 99: / Line 103: @@
 * '''Effectors of protein activity:'''
-* '''Interactions:''' [[DnaA]]context.gif]].*
+* '''Interactions:'''
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-[[YabA]]context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-[[DnaN]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed]
-* '''Localization:''' nucleoid (midcontext.gif]].*
+* '''Localization:'''
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-cell spot) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
 === Database entries ===
@@ Line 117: / Line 115: @@
 * '''KEGG entry:''' [http://www.genome.jp/dbgetcontext.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
-  |-bin/www_bget?bsu+BSU00020]
+  |-bin/www_bget?bsu+BSU00030]
-* '''E.C. number:''' 2.7.7.7
+* '''E.C. number:'''
 === Additional information===
@@ Line 125: / Line 123: @@
 =Expression and regulation=
-* '''Operon:''' ''[[dnaA]]context.gif]].*
+* '''Operon:''' ''[[yaaA]]context.gif]].*
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
-  |-[[dnaN]]''  [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
+  |-[[recF]]context.gif]].*
+ <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
+ |-[[yaaB]]context.gif]].*
+ <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
+ |-[[gyrB]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
-* '''Sigma factor:''' [[SigA]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
+* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
-* '''Regulation:''' negatively controlled by [[DnaA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/2168872 PubMed] and [[Spo0A]]  [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed]
+* '''Regulation:'''
 * '''Regulatory mechanism:'''
@@ Line 154: / Line 156: @@
 =Labs working on this gene/protein=
-[[Philippe Noirot]], Jouycontext.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-encontext.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-Josas, France [http://locus.jouy.inra.fr/cms/index.php?id=18 homepage]
 =Your additional remarks=
@@ Line 167: / Line 164: @@
   <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
   |-2279. [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed]
-# Fukuoka et al.  (1990) Purification and characterization of an initiation protein for chromosomal replication, DnaA, in ''Bacillus subtilis''. ''J. Biochem.'' '''107:''' 732context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-739. [http://www.ncbi.nlm.nih.gov/sites/entrez/2168872 PubMed]
-# Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory ''Proteomics'' '''6:''' 2135context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-2146. [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
-# Molle et al. (2003) The Spo0A regulon of ''Bacillus subtilis''.''Mol. Microbiol.'' '''50:''' 1683context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-1701. [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed]
-# Noirotcontext.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-Gros et al. (2002) An expanded view of bacterial DNA replication. ''Proc. Natl. Acad. Sci. USA'' '''99:''' 8342context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-8347. [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed]
-# Noirotcontext.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-Gros et al. (2002) Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus Title ''Proc. Natl. Acad. Sci. USA'' '''103:''' 2368context.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-2373. [http://www.ncbi.nlm.nih.gov/sites/entrez/16461910 PubMed]
-# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' pagecontext.gif]].*
- <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small>
- |-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Difference between revisions of "Sandbox"

Revision as of 10:32, 23 March 2009

Contents

The gene

Basic information

Phenotypes of a mutant

Database entries

Additional information

The protein

Basic information/ Evolution

Extended information on the protein

Database entries

Additional information

Expression and regulation

Biological materials

Labs working on this gene/protein

Your additional remarks

References

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