Difference between revisions of "CwlO"
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cwlO_3574363_3575784_-1 cwlO] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cwlO_3574363_3575784_-1 cwlO] {{PubMed|22383849}} | ||
− | * '''[[Sigma factor]]:''' [[SigA]] | + | * '''[[Sigma factor]]:''' [[SigA]] {{PubMed|24163346}} |
− | * '''Regulation:''' | + | * '''Regulation:''' |
+ | ** expressed during exponential growth ([[WalR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17581128 PubMed] | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
+ | ** [[WalR]]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/17581128 PubMed] | ||
* '''Additional information:''' | * '''Additional information:''' | ||
− | ** The mRNA has a long 5' leader region. This may indicate RNA-based regulation {{PubMed|20525796}} | + | ** The mRNA has a long 5' leader region (187 N). This may indicate RNA-based regulation {{PubMed|20525796}} |
+ | ** the leader mRNA is subject to cleavage by [[RNase Y|rny]], this results in limited expression of ''[[cwlO]]'' {{PubMed|24163346}} | ||
+ | ** there is a [[SigB]]-dependent anti-sense transcript which is expressed in the stationary phase {{PubMed|24163346}} | ||
=Biological materials = | =Biological materials = | ||
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<pubmed>23066944</pubmed> | <pubmed>23066944</pubmed> | ||
== Original publications == | == Original publications == | ||
− | <pubmed>21478646 16233686,17581128, 20525796,18957862, 20059685 ,22139507 23855774 23869552</pubmed> | + | <pubmed>21478646 16233686,17581128, 20525796,18957862, 20059685 ,22139507 23855774 23869552 24163346</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] |
Revision as of 17:54, 12 January 2014
- Description: D,L-endopeptidase-type autolysin, primary autolytic pathway for cell elongation
Gene name | cwlO |
Synonyms | yzkA, yvcE |
Essential | no |
Product | endopeptidase-type autolysin |
Function | cell wall synthesis, cell elongation |
Gene expression levels in SubtiExpress: cwlO | |
Interactions involving this protein in SubtInteract: CwlO | |
MW, pI | 50 kDa, 5.326 |
Gene length, protein length | 1419 bp, 473 aa |
Immediate neighbours | trxB, yvcD |
Sequences | Protein DNA DNA_with_flanks |
Genetic context This image was kindly provided by SubtiList
| |
Expression at a glance PubMed |
Contents
Categories containing this gene/protein
cell wall synthesis, cell wall degradation/ turnover
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU34800
Phenotypes of a mutant
- a cwlO lytE mutant is not viable PubMed
- shorter, fatter cells, this can be rescued by addition of Mg(2+) PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: peptidase C40 family (according to Swiss-Prot)
- Paralogous protein(s): the C-terminal D,L-endopeptidase domains of LytE, LytF, CwlS, and CwlO exhibit strong sequence similarity
Extended information on the protein
- Kinetic information:
- Modification:
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P40767
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Original publications