Difference between revisions of "PtpZ"

From SubtiWiki
Jump to: navigation, search
Line 37: Line 37:
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
 
<br/><br/><br/><br/>
<br/><br/><br/><br/>
+
<br/><br/>
<br/><br/><br/><br/>
 
 
 
 
 
<br/><br/><br/>
 
  
 
= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
Line 112: Line 108:
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywqE_3731005_3731769_-1 ptpZ] {{PubMed|22383849}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ywqE_3731005_3731769_-1 ptpZ] {{PubMed|22383849}}
  
* '''Sigma factor:''' [[SigA]] {{PubMed|20815827}}
+
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|20815827}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
Line 141: Line 137:
  
 
=References=
 
=References=
'''Additional publications:''' {{PubMed|20817675}}
+
<pubmed>15866923,12970183, 21605684 20815827 21605684 20817675</pubmed>
<pubmed>15866923,12970183, 21605684 20815827 21605684</pubmed>
 
  
 
[[Category:Protein-coding genes]]
 
[[Category:Protein-coding genes]]

Revision as of 21:19, 18 June 2013

Gene name ptpZ
Synonyms ywqE
Essential no
Product phosphotyrosine protein phosphatase,
antagonist to PtkA
Function protein tyrosine dephosphorylation
Gene expression levels in SubtiExpress: ptpZ
Interactions involving this protein in SubtInteract: PtpZ
MW, pI 28 kDa, 6.66
Gene length, protein length 762 bp, 254 aa
Immediate neighbours ugd, ptkA
Sequences Protein DNA DNA_with_flanks
Genetic context
YwqE context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
PtpZ expression.png















Categories containing this gene/protein

biofilm formation, protein modification

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

  • Locus tag: BSU36240

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: Protein tyrosine phosphate + H2O = protein tyrosine + phosphate (according to Swiss-Prot), dephosphorylation of Ugd, TuaD and PtkA PubMed
  • Protein family: cpsB/capC family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • KEGG entry: [2]

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References