Difference between revisions of "RapG"

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(→‎Expression and regulation)
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|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[DegU]] activity
 
|style="background:#ABCDEF;" align="center"|'''Function''' || control of [[DegU]] activity
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU40300 rapG]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU40300 rapG]
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapG RapG]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/RapG RapG]
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yycN]]'', ''[[phrG]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yycN]]'', ''[[phrG]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16067&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU40300 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU40300 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU40300 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:rapG_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:rapG_context.gif]]

Revision as of 15:18, 13 May 2013

Gene name rapG
Synonyms yycM
Essential no
Product response regulator aspartate phosphatase
Function control of DegU activity
Gene expression levels in SubtiExpress: rapG
Interactions involving this protein in SubtInteract: RapG
MW, pI 42 kDa, 4.807
Gene length, protein length 1095 bp, 365 aa
Immediate neighbours yycN, phrG
Sequences Protein DNA Advanced_DNA
Genetic context
RapG context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
RapG expression.png
























Categories containing this gene/protein

protein modification, transcription factors and their control, quorum sensing

This gene is a member of the following regulons

RghR regulon, SinR regulon

The gene

Basic information

  • Locus tag: BSU40300

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: control of DegU activity PubMed
  • Protein family: RAP family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity: binding of PhrG to RapG prevents it from binding DegU PubMed

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

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