Difference between revisions of "YcnJ"

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(Expression and regulation)
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|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of copper
 
|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of copper
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03950 ycnJ]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03950 ycnJ]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 59 kDa, 10.098   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 59 kDa, 10.098   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnI]]'', ''[[ycnK]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ycnI]]'', ''[[ycnK]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12203&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03950 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03950 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03950 Advanced_DNA]
 
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Revision as of 12:09, 13 May 2013

  • Description: copper transporter

Gene name ycnJ
Synonyms
Essential no
Product copper transporter
Function uptake of copper
Gene expression levels in SubtiExpress: ycnJ
MW, pI 59 kDa, 10.098
Gene length, protein length 1623 bp, 541 aa
Immediate neighbours ycnI, ycnK
Sequences Protein DNA Advanced_DNA
Genetic context
YcnJ context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcnJ expression.png















Categories containing this gene/protein

transporters/ other, trace metal homeostasis (Cu, Zn, Ni, Mn, Mo), membrane proteins

This gene is a member of the following regulons

YcnK regulon

The gene

Basic information

  • Locus tag: BSU03950

Phenotypes of a mutant

growth-defective under copper-limiting conditions PubMed

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: uptake of copper PubMed
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by copper limitation (YcnK) PubMed
    • induction of the ycnK-ycnJ-ycnI in a csoR mutant results from intracellular copper depletion due to the constitutive expression of the copZ-copA operon (copper export) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Mohamed Marahiel, Marburg University, Germany homepage

Your additional remarks

References