Difference between revisions of "YcnI"

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(→‎Expression and regulation)
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03940 ycnI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU03940 ycnI]
 
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.834   
 
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 4.834   
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gdh]]'', ''[[ycnJ]]''
 
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gdh]]'', ''[[ycnJ]]''
 
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|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB12202&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU03940 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU03940 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU03940 Advanced_DNA]
 
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|colspan="2" | '''Genetic context''' <br/> [[Image:ycnI_context.gif]]
 
|colspan="2" | '''Genetic context''' <br/> [[Image:ycnI_context.gif]]

Revision as of 12:09, 13 May 2013

  • Description: unknown

Gene name ycnI
Synonyms
Essential no
Product unknown
Function unknown
Gene expression levels in SubtiExpress: ycnI
MW, pI 21 kDa, 4.834
Gene length, protein length 612 bp, 204 aa
Immediate neighbours gdh, ycnJ
Sequences Protein DNA Advanced_DNA
Genetic context
YcnI context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YcnI expression.png















Categories containing this gene/protein

membrane proteins, proteins of unknown function

This gene is a member of the following regulons

YcnK regulon

The gene

Basic information

  • Locus tag: BSU03940

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
    • induced by copper limitation (YcnK) PubMed
    • induction of the ycnK-ycnJ-ycnI in a csoR mutant results from intracellular copper depletion due to the constitutive expression of the copZ-copA operon (copper export) PubMed
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

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