Difference between revisions of "Drm"
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=== Database entries === | === Database entries === | ||
| − | * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3M8W 3M8W] (from ''B. cereus'', 77% identity, 86% similarity) | + | * '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3M8W 3M8W] (from ''B. cereus'', 77% identity, 86% similarity) {{PubMed|21193409}} |
* '''UniProt:''' [http://www.uniprot.org/uniprot/P46353 P46353] | * '''UniProt:''' [http://www.uniprot.org/uniprot/P46353 P46353] | ||
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=References= | =References= | ||
| − | <pubmed> 10537218</pubmed> | + | <pubmed> 10537218 17218307 10537218 21193409 </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 12:35, 19 February 2011
- Description: phosphopentomutase
| Gene name | drm |
| Synonyms | yqkN |
| Essential | no |
| Product | phosphopentomutase |
| Function | utilization of deoxyribose |
| Metabolic function and regulation of this protein in SubtiPathways: Nucleoside catabolism, Nucleotides (regulation) | |
| MW, pI | 43 kDa, 4.974 |
| Gene length, protein length | 1182 bp, 394 aa |
| Immediate neighbours | pupG, ripX |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Contents
Categories containing this gene/protein
utilization of nucleotides, phosphoproteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU23500
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate (according to Swiss-Prot)
- Protein family: phosphopentomutase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- UniProt: P46353
- KEGG entry: [3]
- E.C. number: 5.4.2.7
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Timothy D Panosian, David P Nannemann, Guy R Watkins, Vanessa V Phelan, W Hayes McDonald, Brian E Wadzinski, Brian O Bachmann, Tina M Iverson
Bacillus cereus phosphopentomutase is an alkaline phosphatase family member that exhibits an altered entry point into the catalytic cycle.
J Biol Chem: 2011, 286(10);8043-8054
[PubMed:21193409]
[WorldCat.org]
[DOI]
(I p)
Boris Macek, Ivan Mijakovic, Jesper V Olsen, Florian Gnad, Chanchal Kumar, Peter R Jensen, Matthias Mann
The serine/threonine/tyrosine phosphoproteome of the model bacterium Bacillus subtilis.
Mol Cell Proteomics: 2007, 6(4);697-707
[PubMed:17218307]
[WorldCat.org]
[DOI]
(P p)
R Schuch, A Garibian, H H Saxild, P J Piggot, P Nygaard
Nucleosides as a carbon source in Bacillus subtilis: characterization of the drm-pupG operon.
Microbiology (Reading): 1999, 145 ( Pt 10);2957-66
[PubMed:10537218]
[WorldCat.org]
[DOI]
(P p)
