Difference between revisions of "Sandbox"
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| − | * '''Description:''' | + | * '''Description:''' DNA polymerase III (gamma and tau subunits) <br/><br/> |
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|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''dnaN'' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dnaG, dnaK '' |
|context.gif]].* | |context.gif]].* | ||
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<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || DNA polymerase III (gamma and tau subunits) |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
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<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || | + | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 41 kDa, 4.718 |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || | + | |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1134 bp, 378 aa |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ | + | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaA]]'', ''[[yaaA]]'' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
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|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-goettingen.de/ | + | |-goettingen.de/dnaN_nucleotide.txt Gene sequence (+200bp) ]''' |
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | |style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.unicontext.gif]].* | ||
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| − | |-goettingen.de/ | + | |-goettingen.de/dnaN_protein.txt Protein sequence]''' |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|- | |- | ||
| − | |colspan="2" | '''Genetic context''' <br/> [[Image: | + | |colspan="2" | '''Genetic context''' <br/> [[Image:dnaN_context.gif]] |
|context.gif]].* | |context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
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* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaAN.html] | * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dnaAN.html] | ||
| − | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+ | + | * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10066] |
=== Additional information=== | === Additional information=== | ||
| Line 102: | Line 102: | ||
|-[[YabA]]context.gif]].* | |-[[YabA]]context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-[[DnaN]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed] | + | |-[[DnaN]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12060778 PubMed] |
| + | |||
| + | * '''Localization:''' nucleoid (midcontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |- | + | |-cell spot) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed] |
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=== Database entries === | === Database entries === | ||
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* '''KEGG entry:''' [http://www.genome.jp/dbgetcontext.gif]].* | * '''KEGG entry:''' [http://www.genome.jp/dbgetcontext.gif]].* | ||
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| − | |-bin/www_bget?bsu+ | + | |-bin/www_bget?bsu+BSU00020] |
| − | * '''E.C. number:''' | + | * '''E.C. number:''' 2.7.7.7 |
=== Additional information=== | === Additional information=== | ||
| Line 163: | Line 163: | ||
=References= | =References= | ||
| − | # | + | # Ogasawara et al. (1985) Structure and function of the region of the replication origin of the ''Bacillus subtilis'' chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.''Nucl. Acids Res.'' '''11:''' 2267context.gif]].* |
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |-initiation | + | |-2279. [http://www.ncbi.nlm.nih.gov/sites/entrez/2987848 PubMed] |
| + | # Fukuoka et al. (1990) Purification and characterization of an initiation protein for chromosomal replication, DnaA, in ''Bacillus subtilis''. ''J. Biochem.'' '''107:''' 732context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |- | + | |-739. [http://www.ncbi.nlm.nih.gov/sites/entrez/2168872 PubMed] |
| − | # | + | # Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory ''Proteomics'' '''6:''' 2135context.gif]].* |
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |- | + | |-2146. [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed] |
| + | # Molle et al. (2003) The Spo0A regulon of ''Bacillus subtilis''.''Mol. Microbiol.'' '''50:''' 1683context.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
| − | |- | + | |-1701. [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647 PubMed] |
# Noirotcontext.gif]].* | # Noirotcontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
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<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|-2373. [http://www.ncbi.nlm.nih.gov/sites/entrez/16461910 PubMed] | |-2373. [http://www.ncbi.nlm.nih.gov/sites/entrez/16461910 PubMed] | ||
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# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' pagecontext.gif]].* | # Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' pagecontext.gif]].* | ||
<div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | <div align="right"> <small>this image is kindly was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]<small> | ||
|-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | |-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed] | ||
Revision as of 10:34, 23 March 2009
- Description: DNA polymerase III (gamma and tau subunits)
| context.gif]].*
this image is kindly was kindly provided by SubtiList
| ||
| Gene name | dnaN | context.gif]].*
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|
| Synonyms | dnaG, dnaK | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Essential | yes PubMed | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Product | DNA polymerase III (gamma and tau subunits) | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Function | DNA replication | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| MW, pI | 41 kDa, 4.718 | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Gene length, protein length | 1134 bp, 378 aa | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| Immediate neighbours | dnaA, yaaA | context.gif]].*
this image is kindly was kindly provided by SubtiList
|
| [1]].*
this image is kindly was kindly provided by SubtiList
| ||
| [2]].*
this image is kindly was kindly provided by SubtiList
| ||
| context.gif]].*
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| ||
Genetic context 
|
context.gif]].*
this image is kindly was kindly provided by SubtiList
| |
Contents
The gene
Basic information
- Coordinates:
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [3]
- SubtiList entry: [4]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions: DnaAcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-YabAcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-DnaN PubMed
- Localization: nucleoid (midcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-cell spot) PubMed
Database entries
- Structure:
- Swiss prot entry:
- KEGG entry: [5]].*
this image is kindly was kindly provided by SubtiList
|-bin/www_bget?bsu+BSU00020]
- E.C. number: 2.7.7.7
Additional information
Expression and regulation
- Operon: dnaAcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-dnaN PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- twocontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-hybrid system:
- Antibody:
Labs working on this gene/protein
Philippe Noirot, Jouycontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-encontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-Josas, France homepage
Your additional remarks
References
- Ogasawara et al. (1985) Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. IV. Transcription of the oriC region and expression of DNA gyrase genes and other open reading frames.Nucl. Acids Res. 11: 2267context.gif]].*
this image is kindly was kindly provided by SubtiList
|-2279. PubMed
- Fukuoka et al. (1990) Purification and characterization of an initiation protein for chromosomal replication, DnaA, in Bacillus subtilis. J. Biochem. 107: 732context.gif]].*
this image is kindly was kindly provided by SubtiList
|-739. PubMed
- Meile et al. (2006) Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory Proteomics 6: 2135context.gif]].*
this image is kindly was kindly provided by SubtiList
|-2146. PubMed
- Molle et al. (2003) The Spo0A regulon of Bacillus subtilis.Mol. Microbiol. 50: 1683context.gif]].*
this image is kindly was kindly provided by SubtiList
|-1701. PubMed
- Noirotcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-Gros et al. (2002) An expanded view of bacterial DNA replication. Proc. Natl. Acad. Sci. USA 99: 8342context.gif]].*
this image is kindly was kindly provided by SubtiList
|-8347. PubMed
- Noirotcontext.gif]].*
this image is kindly was kindly provided by SubtiList
|-Gros et al. (2002) Functional dissection of YabA, a negative regulator of DNA replication initiation in Bacillus Title Proc. Natl. Acad. Sci. USA 103: 2368context.gif]].*
this image is kindly was kindly provided by SubtiList
|-2373. PubMed
- Author1, Author2 & Author3 (year) Title Journal volume: pagecontext.gif]].*
![[1]](http://subtiwiki.unicontext.gif){kind=link}
![[5]](http://www.genome.jp/dbgetcontext.gif){kind=link}