Difference between revisions of "Sandbox"

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−
* '''Description:''' tRNA-Arg
+
* '''Description:''' 16S rRNA<br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
−
|''trnB-Arg''
+
|''rrnO-16S''
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''trnE ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
−
|style="background:#ABCDEF;" align="center"| '''Product''' || transfer RNA-Arg
+
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosomal RNA-16S
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
 
|style="background:#ABCDEF;" align="center"|'''Function''' || translation  
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|-|-
 
|-|-
 
    
 
    
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[trnB-Pro]]'', ''[[trnB-Gly1]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gyrA]]'', ''[[trnO-Ile]]''
 
|-
 
|-
−
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/trnB-Arg_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
+
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/rrnO-16S_nucleotide.txt    Gene sequence      (+200bp)  ]'''  
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|style="background:#FAF8CC;" align="center"|'''  '''
 
|-
 
|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:trnB-Arg_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:rrnO-16S_context.gif]]
 
|-
 
|-
 
|}
 
|}
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<br/><br/>
 
<br/><br/>
  
−
<br/><br/><br/><br/><br/>
 
 
=The gene=
 
=The gene=
  
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=== Database entries ===
 
=== Database entries ===
  
−
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/trnB.html]
+
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/rrnO-16S-trnO-Ile-trnO-Ala-rrnO-23S-rrnO-5S.html]
 +
 
 +
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00005]
  
−
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG00080]
 
−
 
 
* '''Structure:'''
 
* '''Structure:'''
  
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=Expression and regulation=
 
=Expression and regulation=
  
−
* '''Operon:''' ''rrnB'' (''[[trnB-Glu]]- [[trnB-Ser2]]- [[trnB-Asn]]- [[trnB-Ile2]]- [[trnB-Gly2]]- [[trnB-Phe]]- [[trnB-His]]- [[trnB-Asp]]- [[trnB-Met2]]- [[trnB-Ser1]]- [[trnB-Met3]]- [[trnB-Met1]]- [[trnB-Ala]]- [[trnB-Pro]]- [[trnB-Arg]]- [[trnB-Gly1]]- [[trnB-Leu2]]- [[trnB-Leu1]]- [[trnB-Lys]]- [[trnB-Thr]]- [[trnB-Val]]- [[rrnB-5S]]- [[rrnB-23S]]- [[rrnB-16S]]'') [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
+
* '''Operon:''' ''rrnO'' operon (''[[rrnO-16S]] - [[trnO-Ile]] - [[trnO-Ala]] -[[rrnO-23S]] - [[rrnO-5S]]'') [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
  
−
* '''Sigma factor:'''  
+
* '''Sigma factor:''' SigA [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
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* '''Antibody:'''
 
* '''Antibody:'''
  
−
=Labs working on this gene/RNA=
+
=Labs working on this gene/protein=
  
 
=Your additional remarks=
 
=Your additional remarks=
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=References=
 
=References=
  
−
# Green CJ, Stewart GC, Hollis MA, Vold BS, Bott KF (1985) Nucleotide sequence of the ''Bacillus subtilis'' ribosomal RNA operon, ''rrnB''.''Nucl. Acids Res.'' '''37:''' 261-266. [http://www.ncbi.nlm.nih.gov/sites/entrez/2414156 PubMed]
+
# Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the ''Bacillus subtilis'' chromosome.''Nucl. Acids Res.'' '''11:''' 6301-6318. [http://www.ncbi.nlm.nih.gov/sites/entrez/6312418 PubMed]
−
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
 

Revision as of 11:58, 3 March 2009

  • Description: 16S rRNA

Gene name rrnO-16S
Synonyms
Essential no
Product ribosomal RNA-16S
Function translation
Gene length
Immediate neighbours gyrA, trnO-Ile
Gene sequence (+200bp)
Genetic context
RrnO-16S context.gif



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]
  • Structure:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. Ogasawara et al. (1983) Structure and organization of rRNA operons in the region of the replication origin of the Bacillus subtilis chromosome.Nucl. Acids Res. 11: 6301-6318. PubMed
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