Difference between revisions of "AppD"
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=== Additional information=== | === Additional information=== | ||
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* '''Kinetic information:''' | * '''Kinetic information:''' | ||
| − | * '''Domains:''' | + | * '''[[Domains]]:''' |
* '''Modification:''' | * '''Modification:''' | ||
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* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=appD_1211477_1212463_1 appD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=appD_1211477_1212463_1 appD] {{PubMed|22383849}} | ||
| − | * '''Sigma factor:''' | + | * '''[[Sigma factor]]:''' |
* '''Regulation:''' | * '''Regulation:''' | ||
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* '''Mutant:''' | * '''Mutant:''' | ||
| + | ** GP2100 (D(''[[appD]]-[[appF]]-[[appA]]-[[appB]]-[[appC]]'')::''spc''), available in [[Jörg Stülke]]'s lab | ||
* '''Expression vector:''' | * '''Expression vector:''' | ||
Revision as of 08:50, 20 July 2015
- Description: oligopeptide ABC transporter (ATP-binding protein)
| Gene name | appD |
| Synonyms | |
| Essential | no |
| Product | oligopeptide ABC transporter (ATP-binding protein)) |
| Function | uptake of oligopeptides |
| Gene expression levels in SubtiExpress: appD | |
| Interactions involving this protein in SubtInteract: AppD | |
| Metabolic function and regulation of this protein in SubtiPathways: appD | |
| MW, pI | 36 kDa, 5.388 |
| Gene length, protein length | 984 bp, 328 aa |
| Immediate neighbours | yjaZ, appF |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
ABC transporters, utilization of nitrogen sources other than amino acids, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU11360
Phenotypes of a mutant
Database entries
- BsubCyc: BSU11360
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: ABC transporter domain (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization: attached to the cell membrane (via AppB-AppC) PubMed
Database entries
- BsubCyc: BSU11360
- Structure:
- UniProt: P42064
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
