Difference between revisions of "YaaO"

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* '''Description:''' carboxynorspermidine decarboxylase <br/><br/>
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* '''Description:''' similar to arginine decarboxylase, but without enzymatic activity  <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"| '''Product''' || carboxynorspermidine decarboxylase
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|style="background:#ABCDEF;" align="center"| '''Product''' || putative arginine decarboxylase
 
|-
 
|-
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|style="background:#ABCDEF;" align="center"|'''Function''' || synthesis of norspermidine
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00270 yaaO]
 
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00270 yaaO]
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= [[Categories]] containing this gene/protein =
 
= [[Categories]] containing this gene/protein =
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{{SubtiWiki category|[[miscellaneous metabolic pathways]]}},
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{{SubtiWiki category|[[sporulation proteins]]}},
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{{SubtiWiki category|[[biofilm formation]]}},
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{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}}
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{{SubtiWiki category|[[sporulation proteins]]}}
 
  
 
= This gene is a member of the following [[regulons]] =
 
= This gene is a member of the following [[regulons]] =
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===Phenotypes of a mutant ===
 
===Phenotypes of a mutant ===
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** impaired biofilm disassembly  {{PubMed|22541437}}
 
  
 
=== Database entries ===
 
=== Database entries ===
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=== Additional information===
 
=== Additional information===
−
 
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* the protein was reported to be involved in norspermidine production and biofilm disassembly {{PubMed|22541437}}; however, this is not the case {{PubMed|24529384}}
  
 
=The protein=
 
=The protein=
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* '''Catalyzed reaction/ biological activity:'''  
 
* '''Catalyzed reaction/ biological activity:'''  
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** catalyzes the last step in norspermidine synthesis {{PubMed|22541437}}
+
** the protein was reported to be involved in norspermidine production and biofilm disassembly {{PubMed|22541437}}; however, this is not the case {{PubMed|24529384}}
  
 
* '''Protein family:''' Orn/Lys/Arg decarboxylase class-I family (according to Swiss-Prot)
 
* '''Protein family:''' Orn/Lys/Arg decarboxylase class-I family (according to Swiss-Prot)
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* '''Kinetic information:'''
 
* '''Kinetic information:'''
  
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* '''Domains:'''  
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* '''[[Domains]]:'''  
  
 
* '''Modification:'''
 
* '''Modification:'''
  
−
* '''Cofactor(s):'''
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* '''Cofactors:'''
  
 
* '''Effectors of protein activity:'''
 
* '''Effectors of protein activity:'''

Revision as of 18:06, 28 February 2014

  • Description: similar to arginine decarboxylase, but without enzymatic activity

Gene name yaaO
Synonyms
Essential no
Product putative arginine decarboxylase
Function unknown
Gene expression levels in SubtiExpress: yaaO
Metabolic function and regulation of this protein in SubtiPathways:
yaaO
MW, pI 52 kDa, 5.713
Gene length, protein length 1440 bp, 480 aa
Immediate neighbours yaaN, tmk
Sequences Protein DNA DNA_with_flanks
Genetic context
YaaO context.gif
This image was kindly provided by SubtiList
Expression at a glance   PubMed
YaaO expression.png















Categories containing this gene/protein

sporulation proteins, poorly characterized/ putative enzymes

This gene is a member of the following regulons

SigW regulon, SigK regulon

The gene

Basic information

  • Locus tag: BSU00270

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

  • the protein was reported to be involved in norspermidine production and biofilm disassembly PubMed; however, this is not the case PubMed

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
    • the protein was reported to be involved in norspermidine production and biofilm disassembly PubMed; however, this is not the case PubMed
  • Protein family: Orn/Lys/Arg decarboxylase class-I family (according to Swiss-Prot)
  • Paralogous protein(s): SpeA

Extended information on the protein

  • Kinetic information:
  • Modification:
  • Cofactors:
  • Effectors of protein activity:

Database entries

  • Structure:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

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