Difference between revisions of "GerKD"
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| − | * '''Description:''' | + | * '''Description:''' D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor <br/><br/> |
{| align="right" border="1" cellpadding="2" | {| align="right" border="1" cellpadding="2" | ||
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Gene name''' | |style="background:#ABCDEF;" align="center"|'''Gene name''' | ||
| − | |'' | + | |''gerKD'' |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yczF '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Product''' || | + | |style="background:#ABCDEF;" align="center"| '''Product''' || D protein for the [[GerKA]]-[[GerKB]]-[[GerKC]] germinant receptor |
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"|'''Function''' || | + | |style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] |
|- | |- | ||
| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU03690 gerKD] |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.011 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 8 kDa, 10.011 | ||
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= [[Categories]] containing this gene/protein = | = [[Categories]] containing this gene/protein = | ||
{{SubtiWiki category|[[membrane proteins]]}}, | {{SubtiWiki category|[[membrane proteins]]}}, | ||
| − | {{SubtiWiki category|[[ | + | {{SubtiWiki category|[[germination]]}} |
= This gene is a member of the following [[regulons]] = | = This gene is a member of the following [[regulons]] = | ||
| Line 53: | Line 53: | ||
===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * faster [[germination]] with the AGFK germinant mixture {{PubMed|23625846}} | ||
| + | * higher sensitivity to AGFK germinants ([[germination]] at lower concentrations) {{PubMed|23625846}} | ||
=== Database entries === | === Database entries === | ||
| Line 61: | Line 63: | ||
=== Additional information=== | === Additional information=== | ||
| − | |||
| − | |||
| Line 106: | Line 106: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[gerKD]]'' {{PubMed|22383849}} |
| − | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 | + | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yczF_419763_419984_-1 gerKD] {{PubMed|22383849}} |
| − | * '''[[Sigma factor]]:''' | + | * '''[[Sigma factor]]:''' [[SigG]] {{PubMed|23625846}} |
* '''Regulation:''' | * '''Regulation:''' | ||
| + | ** expressed during [[sporulation]] in the forespore ([[SigG]]) {{PubMed|23625846}} | ||
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 137: | Line 138: | ||
=References= | =References= | ||
| − | + | <pubmed> 23625846 22383849</pubmed> | |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:31, 30 April 2013
| Gene name | gerKD |
| Synonyms | yczF |
| Essential | no |
| Product | D protein for the GerKA-GerKB-GerKC germinant receptor |
| Function | germination |
| Gene expression levels in SubtiExpress: gerKD | |
| MW, pI | 8 kDa, 10.011 |
| Gene length, protein length | 219 bp, 73 aa |
| Immediate neighbours | yclG, gerKA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
membrane proteins, germination
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU03690
Phenotypes of a mutant
- faster germination with the AGFK germinant mixture PubMed
- higher sensitivity to AGFK germinants (germination at lower concentrations) PubMed
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: O31479
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- expressed during sporulation in the forespore (SigG) PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
