Difference between revisions of "YdbT"
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|style="background:#ABCDEF;" align="center"|'''Function''' || confers resistence against antimicrobial compounds from ''B. amyloliquefaciens'' | |style="background:#ABCDEF;" align="center"|'''Function''' || confers resistence against antimicrobial compounds from ''B. amyloliquefaciens'' | ||
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| − | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http:// | + | |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU04600 ydbT] |
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 56 kDa, 9.497 | |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 56 kDa, 9.497 | ||
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydbS]]'', ''[[ydcA]]'' | |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ydbS]]'', ''[[ydcA]]'' | ||
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| − | | | + | |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU04600 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU04600 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU04600 Advanced_DNA] |
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|colspan="2" | '''Genetic context''' <br/> [[Image:ydbT_context.gif]] | |colspan="2" | '''Genetic context''' <br/> [[Image:ydbT_context.gif]] | ||
Revision as of 12:11, 13 May 2013
- Description: resistence against antimicrobial compounds from B. amyloliquefaciens
| Gene name | ydbT |
| Synonyms | |
| Essential | no |
| Product | unknown |
| Function | confers resistence against antimicrobial compounds from B. amyloliquefaciens |
| Gene expression levels in SubtiExpress: ydbT | |
| MW, pI | 56 kDa, 9.497 |
| Gene length, protein length | 1479 bp, 493 aa |
| Immediate neighbours | ydbS, ydcA |
| Sequences | Protein DNA Advanced_DNA |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
cell envelope stress proteins (controlled by SigM, V, W, X, Y), resistance against toxins/ antibiotics, membrane proteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU04600
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: UPF0699 family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Localization:
- cell membrane (according to Swiss-Prot)
Database entries
- Structure:
- UniProt: P96616
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Bronwyn G Butcher, John D Helmann
Identification of Bacillus subtilis sigma-dependent genes that provide intrinsic resistance to antimicrobial compounds produced by Bacilli.
Mol Microbiol: 2006, 60(3);765-82
[PubMed:16629676]
[WorldCat.org]
[DOI]
(P p)
Min Cao, Tao Wang, Rick Ye, John D Helmann
Antibiotics that inhibit cell wall biosynthesis induce expression of the Bacillus subtilis sigma(W) and sigma(M) regulons.
Mol Microbiol: 2002, 45(5);1267-76
[PubMed:12207695]
[WorldCat.org]
[DOI]
(P p)
Min Cao, Phil A Kobel, Maud M Morshedi, Ming Fang Winston Wu, Chris Paddon, John D Helmann
Defining the Bacillus subtilis sigma(W) regulon: a comparative analysis of promoter consensus search, run-off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches.
J Mol Biol: 2002, 316(3);443-57
[PubMed:11866510]
[WorldCat.org]
[DOI]
(P p)
