Difference between revisions of "FsrA"
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===Phenotypes of a mutant === | ===Phenotypes of a mutant === | ||
| + | * transcription profile of a ''[[fsrA]]'' mutant strain: [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] {{PubMed|22389480}} | ||
=== Database entries === | === Database entries === | ||
| Line 48: | Line 49: | ||
* '''SubtiList entry:''' no entry | * '''SubtiList entry:''' no entry | ||
| + | |||
| + | * '''GEO entry:''' [http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE27416 GEO] {{PubMed|22389480} | ||
* '''Structure:''' | * '''Structure:''' | ||
Revision as of 16:15, 8 March 2012
- Description: regulatory RNA
| Gene name | fsrA |
| Synonyms | |
| Essential | no |
| Product | sRNA FsrA |
| Function | inhibition of sdhC translation |
| Gene length | aaa bp |
| Immediate neighbours | ykuI, ykuJ |
| Gene sequence (+200bp) | |
Genetic context 
| |
Contents
Categories containing this gene/protein
This gene is a member of the following regulons
The FsrA regulon: citB, leuC-leuD, lutB, sdhC
The gene
Basic information
- Locus tag:
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: no entry
- GEO entry: GEO {{PubMed|22389480}
- Structure:
Additional information
- Swiss prot entry:
- KEGG entry: no entry
- E.C. number:
Additional information
The RNA
Basic information/ Evolution
- Catalyzed reaction/ biological activity: hybridizes to sdhC, citB, lutB, and leuC-leuD mRNAs and inhibits their translation. PubMed
Extended information on the RNA
- Kinetic information
Database entries
- Structure:
Additional information
Expression and regulation
- Operon:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
Labs working on this gene/RNA
John Helmann, Cornell University, USA Homepage
Your additional remarks
References
Gregory T Smaldone, Olga Revelles, Ahmed Gaballa, Uwe Sauer, Haike Antelmann, John D Helmann
A global investigation of the Bacillus subtilis iron-sparing response identifies major changes in metabolism.
J Bacteriol: 2012, 194(10);2594-605
[PubMed:22389480]
[WorldCat.org]
[DOI]
(I p)
Ahmed Gaballa, Haike Antelmann, Claudio Aguilar, Sukhjit K Khakh, Kyung-Bok Song, Gregory T Smaldone, John D Helmann
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins.
Proc Natl Acad Sci U S A: 2008, 105(33);11927-32
[PubMed:18697947]
[WorldCat.org]
[DOI]
(I p)
