Difference between revisions of "KduI"

From SubtiWiki
Jump to: navigation, search
(Expression and regulation)
Line 90: Line 90:
 
* '''Operon:''' ''[[kduI]]-[[kduD]]'' {{PubMed|17322190}}
 
* '''Operon:''' ''[[kduI]]-[[kduD]]'' {{PubMed|17322190}}
  
* '''[[Sigma factor]]:'''  
+
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|17322190}}
  
 
* '''Regulation:'''  
 
* '''Regulation:'''  
 +
** induced by galacturonate ([[KdgR]]) {{PubMed|17322190}}
 +
** repressed by glucose ([[CcpA]]) {{PubMed|17322190}}
  
 
* '''Regulatory mechanism:'''  
 
* '''Regulatory mechanism:'''  
 +
** [[KdgR]]: transcription repression {{PubMed|17322190}}
 +
** [[CcpA]]: transcription repression {{PubMed|17322190}}
  
* '''Additional information:'''  
+
* '''Additional information:'''
  
 
=Biological materials =
 
=Biological materials =

Revision as of 21:33, 26 October 2009

  • Description: 5-keto-4-deoxyuronate isomerase

Gene name kduI
Synonyms
Essential no
Product 5-keto-4-deoxyuronate isomerase
Function utilization of galacturonic acid
MW, pI 30 kDa, 5.115
Gene length, protein length 825 bp, 275 aa
Immediate neighbours kdgR, kduD
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
KduI context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU22130

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity: 4-deoxy-L-threo-5-hexosulose uronate = 3-deoxy-D-glycero-2,5-hexodiulosonate (according to Swiss-Prot)
  • Protein family: PNP/MTAP phosphorylase family (according to Swiss-Prot)
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [2]

Additional information

Expression and regulation

  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References