Difference between revisions of "PdaA"
| Line 88: | Line 88: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''pdaA'' {{PubMed|12374835}} |
| − | * '''[[Sigma factor]]:''' [[SigG]] {{PubMed|15699190}} | + | * '''[[Sigma factor]]:''' [[SigG]] {{PubMed|12374835,15699190}} |
| − | * '''Regulation:''' | + | * '''Regulation:''' expressed during sporulation ([[SigG]]) {{PubMed|12374835,15699190}} |
* '''Regulatory mechanism:''' | * '''Regulatory mechanism:''' | ||
| Line 118: | Line 118: | ||
=References= | =References= | ||
| − | <pubmed>12374835,15687192,, </pubmed> | + | <pubmed>12374835,15687192,15699190, </pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:43, 31 August 2009
- Description: polysaccharide deacetylase, required for germination
| Gene name | pdaA |
| Synonyms | yfjS |
| Essential | no |
| Product | polysaccharide deacetylase |
| Function | germination |
| MW, pI | 29 kDa, 7.318 |
| Gene length, protein length | 789 bp, 263 aa |
| Immediate neighbours | yfjT, yfjR |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
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Contents
The gene
Basic information
- Locus tag: BSU07980
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: polysaccharide deacetylase family (according to Swiss-Prot)
- Paralogous protein(s):
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization:
Database entries
- Structure: 1W17
- UniProt: O34928
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: pdaA PubMed
- Regulatory mechanism:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
