Difference between revisions of "Sandbox"

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* '''Description:''' aliphatic sulfonate ABC transporter (permease) <br/><br/>
+
* '''Description:''' aliphatic sulfonate ABC transporter (binding lipoprotein) <br/><br/>
  
 
{| align="right" border="1" cellpadding="2"  
 
{| align="right" border="1" cellpadding="2"  
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
 
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ssuC''
+
|''ssuA''
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ygaM, yzeB ''
+
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ygbA, yzeA ''
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|style="background:#ABCDEF;" align="center"| '''Essential''' || no  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || aliphatic sulfonate ABC transporter (permease)
+
|style="background:#ABCDEF;" align="center"| '''Product''' || aliphatic sulfonate ABC transporter (binding lipoprotein)
 
|-
 
|-
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sulfonate uptake
 
|style="background:#ABCDEF;" align="center"|'''Function''' || sulfonate uptake
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 10.481  
+
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 4.85  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 828 bp, 276 aa  
+
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 996 bp, 332 aa  
 
|-
 
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ssuA]]'', ''[[ssuD]]''
+
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ssuB]]'', ''[[ssuC]]''
 
|-
 
|-
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|colspan="2" style="background:#FAF8CC;" align="center"|'''Hier soll was neues rein'''
 
|-
 
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ssuC_context.gif]]
+
|colspan="2" | '''Genetic context''' <br/> [[Image:ssuA_context.gif]]
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
 
|-
 
|-
Line 43: Line 43:
 
* '''DBTBS entry:''' no entry
 
* '''DBTBS entry:''' no entry
  
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10657]
+
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10656]
  
 
=== Additional information===
 
=== Additional information===
Line 80: Line 80:
 
* '''Swiss prot entry:'''
 
* '''Swiss prot entry:'''
  
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU08850]
+
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU08840]
  
 
* '''E.C. number:'''
 
* '''E.C. number:'''

Revision as of 20:42, 15 April 2009

  • Description: aliphatic sulfonate ABC transporter (binding lipoprotein)

Gene name ssuA
Synonyms ygbA, yzeA
Essential no
Product aliphatic sulfonate ABC transporter (binding lipoprotein)
Function sulfonate uptake
MW, pI 36 kDa, 4.85
Gene length, protein length 996 bp, 332 aa
Immediate neighbours ssuB, ssuC
Hier soll was neues rein
Genetic context
SsuA context.gif
This image was kindly provided by SubtiList



The gene

Basic information

  • Coordinates:

Phenotypes of a mutant

Database entries

  • DBTBS entry: no entry
  • SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • Swiss prot entry:
  • KEGG entry: [2]
  • E.C. number:

Additional information

Expression and regulation

  • Regulation:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

  1. van der Ploeg JR, Cummings NJ, Leisinger T, Connerton IF. (1998) Bacillus subtilis genes for the utilization of sulfur from aliphatic sulfonates. Microbiology Sep;144(Pt9): 2555-61. PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed