Difference between revisions of "Ribosome"
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| + | '''Most genes encoding ribosomal proteins are essential and many ribosomal proteins belong to the small set of [[universally conserved proteins]].''' | ||
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| + | ==[http://www.proteopedia.org/wiki/index.php/Ribosome Structure of the ribosome]== | ||
| + | * [http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6306 EMD-6306] ([[MifM]]-stalled [[ribosome]] complex) {{PubMed|25903689}} | ||
| + | * [http://www.rcsb.org/pdb/search/structidSearch.do?structureId=3J9W 3J9W] ([[MifM]]-stalled [[ribosome]] complex) {{PubMed|25903689}} | ||
| + | * [http://https://www.rcsb.org/structure/8QCQ AdpA-stalled ribosomal complex] {{PubMed|38503735}} | ||
| + | |||
==Proteins of the large subunit== | ==Proteins of the large subunit== | ||
* [[rplA|L1]] | * [[rplA|L1]] | ||
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* [[rplE|L5]] | * [[rplE|L5]] | ||
* [[rplF|L6]] | * [[rplF|L6]] | ||
| + | * [[rplI|L9]] | ||
* [[rplJ|L10]] | * [[rplJ|L10]] | ||
* [[rplK|L11]] | * [[rplK|L11]] | ||
* [[rplL|L12]] | * [[rplL|L12]] | ||
| + | * [[rplM|L13]] | ||
* [[rplN|L14]] | * [[rplN|L14]] | ||
| + | * [[rplO|L15]] | ||
* [[rplP|L16]] | * [[rplP|L16]] | ||
| + | * [[rplQ|L17]] | ||
* [[rplR|L18]] | * [[rplR|L18]] | ||
| + | * [[rplS|L19]] | ||
| + | * [[rplT|L20]] | ||
| + | * [[rplU|L21]] | ||
* [[rplV|L22]] | * [[rplV|L22]] | ||
* [[rplW|L23]] | * [[rplW|L23]] | ||
* [[rplX|L24]] | * [[rplX|L24]] | ||
| + | * [[rpmA|L27]] | ||
| + | * [[rpmB|L28]] | ||
* [[rpmC|L29]] | * [[rpmC|L29]] | ||
* [[rpmD|L30]] | * [[rpmD|L30]] | ||
* [[rpmE|L31]] | * [[rpmE|L31]] | ||
| + | * [[rpmF|L32]] | ||
* [[rpmGA|L33a]] | * [[rpmGA|L33a]] | ||
* [[rpmGB|L33b]] | * [[rpmGB|L33b]] | ||
| + | * [[rpmH|L34]] | ||
| + | * [[rpmI|L35]] | ||
| + | * [[rpmJ|L36]] | ||
==Proteins of the small subunit== | ==Proteins of the small subunit== | ||
| + | * [[ypfD|S1]] | ||
| + | * [[rpsB|S2]] | ||
* [[rpsC|S3]] | * [[rpsC|S3]] | ||
| + | * [[rpsD|S4]] | ||
* [[rpsE|S5]] | * [[rpsE|S5]] | ||
| + | * [[rpsF|S6]] | ||
* [[rpsG|S7]] | * [[rpsG|S7]] | ||
* [[rpsH|S8]] | * [[rpsH|S8]] | ||
| + | * [[rpsI|S9]] | ||
* [[rpsJ|S10]] | * [[rpsJ|S10]] | ||
| + | * [[rpsK|S11]] | ||
* [[rpsL|S12]] | * [[rpsL|S12]] | ||
| + | * [[rpsM|S13]] | ||
* [[rpsN|S14]] | * [[rpsN|S14]] | ||
| + | * [[rpsO|S15]] | ||
| + | * [[rpsP|S16]] | ||
* [[rpsQ|S17]] | * [[rpsQ|S17]] | ||
| + | * [[rpsR|S18]] | ||
* [[rpsS|S19]] | * [[rpsS|S19]] | ||
| + | * [[rpsT|S20]] | ||
| + | * [[rpsU|S21]] | ||
==Proteins that are part of the ribosome only under specific conditions== | ==Proteins that are part of the ribosome only under specific conditions== | ||
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* [[YhzA]]: replaces [[rpmE|L31]] under conditions of zinc limitation | * [[YhzA]]: replaces [[rpmE|L31]] under conditions of zinc limitation | ||
* [[YtiA]]: replaces [[rpsN|S14]] under conditions of zinc limitation | * [[YtiA]]: replaces [[rpsN|S14]] under conditions of zinc limitation | ||
| + | |||
| + | ==Proteins that are similar to ribosomal proteins== | ||
| + | * [[YfjL]] | ||
| + | * [[YlxQ]] | ||
| + | * [[YpfD]] | ||
| + | |||
| + | ==Related pages== | ||
| + | * [[5S rRNA]] | ||
| + | * [[16S rRNA]] | ||
| + | * [[23S rRNA]] | ||
| + | * [[translation]] | ||
| + | |||
| + | ==Back to [[Protein-protein interactions]]== | ||
| + | |||
| + | ==Important original publications== | ||
| + | <pubmed>22848659 23420519 23002217 23700310 24186064 25182490 25132179 25903689 24500425 25775265 25775268 25707802 ,27382067 27873260 | ||
| + | </pubmed> | ||
==Reviews on ribosome structure and function== | ==Reviews on ribosome structure and function== | ||
| − | <pubmed> 19838167 17574829 16962654 16959973 12370012 </pubmed> | + | <pubmed> 19838167 17574829 16962654 16959973 12370012 20393556 19653700 21529161 21548786 23433801 23700310 </pubmed> |
Latest revision as of 17:27, 20 March 2024
Most genes encoding ribosomal proteins are essential and many ribosomal proteins belong to the small set of universally conserved proteins.
Contents
- 1 Structure of the ribosome
- 2 Proteins of the large subunit
- 3 Proteins of the small subunit
- 4 Proteins that are part of the ribosome only under specific conditions
- 5 Proteins that are similar to ribosomal proteins
- 6 Related pages
- 7 Back to Protein-protein interactions
- 8 Important original publications
- 9 Reviews on ribosome structure and function
Structure of the ribosome
- EMD-6306 (MifM-stalled ribosome complex) PubMed
- 3J9W (MifM-stalled ribosome complex) PubMed
- AdpA-stalled ribosomal complex PubMed
Proteins of the large subunit
- L1
- L2
- L3
- L4
- L5
- L6
- L9
- L10
- L11
- L12
- L13
- L14
- L15
- L16
- L17
- L18
- L19
- L20
- L21
- L22
- L23
- L24
- L27
- L28
- L29
- L30
- L31
- L32
- L33a
- L33b
- L34
- L35
- L36
Proteins of the small subunit
Proteins that are part of the ribosome only under specific conditions
- Ctc: present in the large subunit under stress conditions
- RpmGC: replaces L33 under conditions of zinc limitation
- YbxF: L7 family, associated to the ribosome during logarithmic growth
- YhzA: replaces L31 under conditions of zinc limitation
- YtiA: replaces S14 under conditions of zinc limitation
Proteins that are similar to ribosomal proteins
Related pages
Back to Protein-protein interactions
Important original publications
Reviews on ribosome structure and function
