Difference between revisions of "Ribosome"
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'''Most genes encoding ribosomal proteins are essential and many ribosomal proteins belong to the small set of [[universally conserved proteins]].''' | '''Most genes encoding ribosomal proteins are essential and many ribosomal proteins belong to the small set of [[universally conserved proteins]].''' | ||
− | + | ==[http://www.proteopedia.org/wiki/index.php/Ribosome Structure of the ribosome]== | |
− | + | * [http://www.ebi.ac.uk/pdbe/entry/emdb/EMD-6306 EMD-6306] ([[MifM]]-stalled [[ribosome]] complex) {{PubMed|25903689}} | |
− | + | * [http://www.rcsb.org/pdb/search/structidSearch.do?structureId=3J9W 3J9W] ([[MifM]]-stalled [[ribosome]] complex) {{PubMed|25903689}} | |
==Proteins of the large subunit== | ==Proteins of the large subunit== |
Revision as of 15:03, 24 April 2015
Most genes encoding ribosomal proteins are essential and many ribosomal proteins belong to the small set of universally conserved proteins.
Contents
- 1 Structure of the ribosome
- 2 Proteins of the large subunit
- 3 Proteins of the small subunit
- 4 Proteins that are part of the ribosome only under specific conditions
- 5 Proteins that are similar to ribosomal proteins
- 6 Related pages
- 7 Back to Protein-protein interactions
- 8 Important original publications
- 9 Reviews on ribosome structure and function
Structure of the ribosome
Proteins of the large subunit
- L1
- L2
- L3
- L4
- L5
- L6
- L9
- L10
- L11
- L12
- L13
- L14
- L15
- L16
- L17
- L18
- L19
- L20
- L21
- L22
- L23
- L24
- L27
- L28
- L29
- L30
- L31
- L32
- L33a
- L33b
- L34
- L35
- L36
Proteins of the small subunit
Proteins that are part of the ribosome only under specific conditions
- Ctc: present in the large subunit under stress conditions
- RpmGC: replaces L33 under conditions of zinc limitation
- YbxF: L7 family, associated to the ribosome during logarithmic growth
- YhzA: replaces L31 under conditions of zinc limitation
- YtiA: replaces S14 under conditions of zinc limitation
Proteins that are similar to ribosomal proteins
Related pages
Back to Protein-protein interactions
Important original publications
Reviews on ribosome structure and function
Ningning Li, Yuling Chen, Qiang Guo, Yixiao Zhang, Yi Yuan, Chengying Ma, Haiteng Deng, Jianlin Lei, Ning Gao
Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit.
Nucleic Acids Res: 2013, 41(14);7073-83
[PubMed:23700310]
[WorldCat.org]
[DOI]
(I p)
Katelyn McGary, Evgeny Nudler
RNA polymerase and the ribosome: the close relationship.
Curr Opin Microbiol: 2013, 16(2);112-7
[PubMed:23433801]
[WorldCat.org]
[DOI]
(I p)
Edward Ki Yun Leung, Nikolai Suslov, Nicole Tuttle, Raghuvir Sengupta, Joseph Anthony Piccirilli
The mechanism of peptidyl transfer catalysis by the ribosome.
Annu Rev Biochem: 2011, 80;527-55
[PubMed:21548786]
[WorldCat.org]
[DOI]
(I p)
Zahra Shajani, Michael T Sykes, James R Williamson
Assembly of bacterial ribosomes.
Annu Rev Biochem: 2011, 80;501-26
[PubMed:21529161]
[WorldCat.org]
[DOI]
(I p)
Sotaro Uemura, Colin Echeverría Aitken, Jonas Korlach, Benjamin A Flusberg, Stephen W Turner, Joseph D Puglisi
Real-time tRNA transit on single translating ribosomes at codon resolution.
Nature: 2010, 464(7291);1012-7
[PubMed:20393556]
[WorldCat.org]
[DOI]
(I p)
T Martin Schmeing, V Ramakrishnan
What recent ribosome structures have revealed about the mechanism of translation.
Nature: 2009, 461(7268);1234-42
[PubMed:19838167]
[WorldCat.org]
[DOI]
(I p)
Matthew A Lauber, William E Running, James P Reilly
B. subtilis ribosomal proteins: structural homology and post-translational modifications.
J Proteome Res: 2009, 8(9);4193-206
[PubMed:19653700]
[WorldCat.org]
[DOI]
(P p)
Veysel Berk, Jamie H D Cate
Insights into protein biosynthesis from structures of bacterial ribosomes.
Curr Opin Struct Biol: 2007, 17(3);302-9
[PubMed:17574829]
[WorldCat.org]
[DOI]
(P p)
Andrei Korostelev, Sergei Trakhanov, Martin Laurberg, Harry F Noller
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements.
Cell: 2006, 126(6);1065-77
[PubMed:16962654]
[WorldCat.org]
[DOI]
(P p)
Maria Selmer, Christine M Dunham, Frank V Murphy, Albert Weixlbaumer, Sabine Petry, Ann C Kelley, John R Weir, V Ramakrishnan
Structure of the 70S ribosome complexed with mRNA and tRNA.
Science: 2006, 313(5795);1935-42
[PubMed:16959973]
[WorldCat.org]
[DOI]
(I p)
Ada Yonath
High-resolution structures of large ribosomal subunits from mesophilic eubacteria and halophilic archaea at various functional States.
Curr Protein Pept Sci: 2002, 3(1);67-78
[PubMed:12370012]
[WorldCat.org]
[DOI]
(P p)