Difference between revisions of "Pseudogenes"

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'''These genes are fragmented in the genome of ''B. subtilis'' 168 and are therefore inactive'''
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{{CategoryTree2
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|Parents=
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* 6. [[Groups of genes]]
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|Neighbours=
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* 6.1. [[Essential genes]]
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* 6.2. [[Membrane proteins]]
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* 6.3. [[GTP-binding proteins]]
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* 6.4. [[Phosphoproteins]]
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* 6.5. [[Universally conserved proteins]]
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* 6.6. [[Poorly characterized/ putative enzymes]]
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* 6.7. [[Proteins of unknown function]]
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* 6.8. [[Short peptides]]
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* 6.9. [[ncRNA]]
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* 6.10. [[Pseudogenes]]
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|Related=
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none
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|}}
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__TOC__
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<br/><br/>
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{| border="0" cellpadding="1"
 
{| border="0" cellpadding="1"
−
|width="50"|<big>'''Genes'''</big>
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|width="100"|<big>'''Genes'''</big>
 
|width="150"|<big>'''Coordinates'''</big>
 
|width="150"|<big>'''Coordinates'''</big>
 
|width="50"|<big>'''BSU-Number'''</big>
 
|width="50"|<big>'''BSU-Number'''</big>
−
|width="400"|<big>'''BSU-Number'''</big>
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|width="400"|<big> </big>
 
|- style="height:20px"  
 
|- style="height:20px"  
 
|  ||   
 
|  ||   
 +
 +
| ''[[rpmGC]]'' ||  ||
 
|-
 
|-
 
| ''[[yqbN/1]]'' || '''2677466..2677657''' || '''BSU26039'''
 
| ''[[yqbN/1]]'' || '''2677466..2677657''' || '''BSU26039'''
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| ''[[yrdD/3]]'' || '''2732747..2732881''' || '''BSU26750''' || '''third part of the yrdD pseudogene'''
 
| ''[[yrdD/3]]'' || '''2732747..2732881''' || '''BSU26750''' || '''third part of the yrdD pseudogene'''
 
|-
 
|-
−
| ''[[ccpA]]'' || '''[[sigma factors]]''' || '''BSU26039'''
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| ''[[yusY/1]]'' || '''3380704..3382212''' || '''BSU32960'''
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|-
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| ''[[yusY/2]]'' || '''3382209..3382499''' || '''BSU32970''' || '''second part of the yusY pseudogene'''
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|-
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| ''[[swrAA/1]]'' || '''3621618..3621956''' || '''BSU35230'''
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|-
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| ''[[swrAA/2]]'' || '''3621931..3622047''' || '''BSU35239''' || '''second part of the swrAA pseudogene'''
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|-
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| ''[[yxiT/1]]'' || '''4006987..4007415''' || '''BSU39029'''
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|-
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| ''[[yxiT/2]]'' || '''4007416..4007658''' || '''BSU39030'''
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|-
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| ''[[sfp/1]]'' || '''407460..407627''' || '''BSU03569'''
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|-
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| ''[[sfp/2]]'' || '''407638..408135''' || '''BSU03570''' || '''second part of the sfp pseudogene'''
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|-
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| ''[[ydzS/1]]'' || '''581228..581329''' || '''BSU05343'''
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|-
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| ''[[ydzS/2]]'' || '''581341..581454''' || '''BSU05344''' || '''second part of the ydzS pseudogene'''
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|-
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| ''[[ydhU/1]]'' || '''633923..634651''' || '''BSU05890'''
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|-
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| ''[[ydhU/2]]'' || '''634651..634776''' || '''BSU05899''' || '''second part of the ydhU pseudogene'''
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|-
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| ''[[ydzT/1]]'' || '''651977..652084''' || '''BSU06033'''
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|-
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| ''[[ydzT/2]]'' || '''652087..652245''' || '''BSU06034''' || '''second part of the ydzT pseudogene'''
 
|-
 
|-
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| ''[[sr1]]'' || '''[[small RNAs]]''' || '''BSU26039'''
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| ''[[ydzT/3]]'' || '''652290..652418''' || '''BSU06036''' || '''third part of the ydzT pseudogene'''
 
|-
 
|-
−
| ''[[gapA]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]''' || '''BSU26039'''
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| ''[[ydzT/4]]'' || '''652511..652720''' || '''BSU06037''' || '''fourth part of the ydzT pseudogene'''
 
|-
 
|-
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| ''[[dnaA]]'' || '''[[templates]]''' || '''BSU26039'''
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| ''[[ydzT/5]]'' || '''652713..653018''' || '''BSU06038''' || '''fifth part of the ydzT pseudogene'''
 
|-
 
|-
−
| ''[[ccpN]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' || '''BSU26039'''
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| ''[[ydzV]]'' || '''654333..654692''' || '''BSU06049'''
 
|-
 
|-
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| ''[[eno]]'' || '''[[SubtiPathways|''Subti''Pathways]]''' || '''BSU26039'''
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| ''[[ydzW/1]]'' || '''657793..658062''' || '''BSU06073'''
 
|-
 
|-
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| ''[[pgi]]'' || '''[[pseudogenes]]''' || '''BSU26039'''
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| ''[[ydzW/2]]'' || '''658061..658189''' || '''BSU06074''' || '''second part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[pckA]]'' || '''[[methods]]''' || '''BSU26039'''
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| ''[[ydzW/3]]'' || '''658189..658605''' || '''BSU06076''' || '''third part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[ptkA]]'' || '''[[list of plasmids]]''' || '''BSU26039'''
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| ''[[ydzW/4]]'' || '''658615..658758''' || '''BSU06077''' || '''fourth part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[mreC]]'' || '''[[riboswitches]]''' || '''BSU26039'''
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| ''[[ydzW/5]]'' || '''658813..659010''' || '''BSU06078''' || '''fifth part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[ccpA]]'' || '''[[sigma factors]]''' || '''BSU26039'''
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| ''[[ydzW/6]]'' || '''659010..659129''' || '''BSU06079''' || '''sixth part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[sr1]]'' || '''[[small RNAs]]''' || '''BSU26039'''
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| ''[[ydzW/7]]'' || '''659129..659221''' || '''BSU06083''' || '''seventh part of the ydzW pseudogene'''
 
|-
 
|-
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| ''[[gapA]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]''' || '''BSU26039'''
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| ''[[yetI]]'' || '''786689..787264''' || '''BSU07170'''
 
|-
 
|-
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| ''[[dnaA]]'' || '''[[templates]]''' || '''BSU26039'''
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| ''[[yezB]]'' || '''787264..787560''' || '''BSU07180''' || '''second part of the yetI pseudogene'''
 
|-
 
|-
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| ''[[ccpN]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' || '''BSU26039'''
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| ''[[appA/1]]'' || '''1213537..1214001''' || '''BSU11381'''
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|-
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| ''[[appA/2]]'' || '''1214001..1215167''' || '''BSU11382''' || '''second part of the appA pseudogene'''
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|-
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| ''[[ymfK/1]]'' || '''1760851..1761303''' || '''BSU16890'''
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|-
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| ''[[ymfK/2]]'' || '''1761302..1761640''' || '''BSU16900''' || '''second part of the ymfK pseudogene'''
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|-
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| ''[[ymzE/1]]'' || '''1862937..1862993''' || '''BSU17266'''
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|-
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| ''[[ymzE/2]]'' || '''1862992..1863168''' || '''BSU17267''' || '''second part of the ymzE pseudogene'''
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|-
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| ''[[yoyK/1]]'' || '''2278108..2278347''' || '''BSU21598'''
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|-
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| ''[[yoyK/2]]'' || '''2278340..2278456''' || '''BSU21599''' || '''second part of the yoyK pseudogene'''
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|-
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| ''[[ypuC/1]]'' || '''2433631..2433885''' || '''BSU23329'''
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|-
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| ''[[ypuC/2]]'' || '''2433878..2434165''' || '''BSU23330''' || '''second part of the ypuC pseudogene'''
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|-
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| ''[[yvzH]]'' || '''3666933..3667016''' || '''BSU35679'''
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|-
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| ''[[yvzI]]'' || '''3671416..3671622''' || '''BSU35698'''
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|-
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| ''[[yvzE]]'' || '''3672929..3673525''' || '''BSU35699'''
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|-
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|  ''[[tuaA/1]]'' || '''3658259..3658408''' || '''BSU35609'''
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|-
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|  ''[[tuaA/2]]'' || '''3658407..3658892''' || '''BSU35610'''
 
|}
 
|}
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=Back to [[categories]]=
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Genename Coordinates BSU-Number
 
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−
 
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yusY/1 3380704..3382212 BSU32960
 
−
yusY/2 3382209..3382499 BSU32970 second part of the yusY pseudogene
 
−
swrAA/1 3621618..3621956 BSU35230
 
−
swrAA/2 3621931..3622047 BSU35239 second part of the swrAA pseudogene
 
−
yxiT/1 4006987..4007415 BSU39029
 
−
yxiT/2 4007416..4007658 BSU39030 second part of the yxiT pseudogene
 
−
sfp/1 407460..407627 BSU03569
 
−
sfp/2 407638..408135 BSU03570 second part of the sfp pseudogene
 
−
ydzS/1 581228..581329 BSU05343
 
−
ydzS/2 581341..581454 BSU05344 second part of the ydzS pseudogene
 
−
ydhU/1 633923..634651 BSU05890
 
−
ydhU/2 634651..634776 BSU05899 second part of the ydhU pseudogene
 
−
ydzT/1 651977..652084 BSU06033
 
−
ydzT/2 652087..652245 BSU06034 second part of the ydzT pseudogene
 
−
ydzT/3 652290..652418 BSU06036 third part of the ydzT pseudogene
 
−
ydzT/4 652511..652720 BSU06037 fourth part of the ydzT pseudogene
 
−
ydzT/5 652713..653018 BSU06038 fifth part of the ydzT pseudogene
 
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ydzW/1 657793..658062 BSU06073
 
−
ydzW/2 658061..658189 BSU06074 second part of the ydzW pseudogene
 
−
ydzW/3 658189..658605 BSU06076 third part of the ydzW pseudogene
 
−
ydzW/4 658615..658758 BSU06077 fourth part of the ydzW pseudogene
 
−
ydzW/5 658813..659010 BSU06078 fifth part of the ydzW pseudogene
 
−
ydzW/6 659010..659129 BSU06079 sixth part of the ydzW pseudogene
 
−
ydzW/7 659129..659221 BSU06083 seventh part of the ydzW pseudogene
 
−
yetI 786689..787264 BSU07170
 
−
yezB 787264..787560 BSU07180 second part of the yetI pseudogene
 
−
appA/1 1213537..1214001 BSU11381
 
−
appA/2 1214001..1215167 BSU11382 second part of the appA pseudogene
 
−
ymfK/1 1760851..1761303 BSU16890
 
−
ymfK/2 1761302..1761640 BSU16900 second part of the ymfK pseudogene
 
−
ymzE/1 1862937..1862993 BSU17266
 
−
ymzE/2 1862992..1863168 BSU17267 second part of the ymzE pseudogene
 
−
yoyK/1 2278108..2278347 BSU21598
 
−
yoyK/2 2278340..2278456 BSU21599 second part of the yoyK pseudogene
 
−
ypuC/1 2433631..2433885 BSU23329
 
−
ypuC/2 2433878..2434165 BSU23330 second part of the ypuC pseudogene
 

Latest revision as of 16:45, 6 February 2015

These genes are fragmented in the genome of B. subtilis 168 and are therefore inactive

Parent category
Neighbouring categories
Related categories

none



Genes Coordinates BSU-Number
rpmGC
yqbN/1 2677466..2677657 BSU26039
yqbN/2 2677657..2678094 BSU26040 second part of the yqbN pseudogene
yrdD/1 2732389..2732547 BSU26748
yrdD/2 2732547..2732747 BSU26749 second part of the yrdD pseudogene
yrdD/3 2732747..2732881 BSU26750 third part of the yrdD pseudogene
yusY/1 3380704..3382212 BSU32960
yusY/2 3382209..3382499 BSU32970 second part of the yusY pseudogene
swrAA/1 3621618..3621956 BSU35230
swrAA/2 3621931..3622047 BSU35239 second part of the swrAA pseudogene
yxiT/1 4006987..4007415 BSU39029
yxiT/2 4007416..4007658 BSU39030
sfp/1 407460..407627 BSU03569
sfp/2 407638..408135 BSU03570 second part of the sfp pseudogene
ydzS/1 581228..581329 BSU05343
ydzS/2 581341..581454 BSU05344 second part of the ydzS pseudogene
ydhU/1 633923..634651 BSU05890
ydhU/2 634651..634776 BSU05899 second part of the ydhU pseudogene
ydzT/1 651977..652084 BSU06033
ydzT/2 652087..652245 BSU06034 second part of the ydzT pseudogene
ydzT/3 652290..652418 BSU06036 third part of the ydzT pseudogene
ydzT/4 652511..652720 BSU06037 fourth part of the ydzT pseudogene
ydzT/5 652713..653018 BSU06038 fifth part of the ydzT pseudogene
ydzV 654333..654692 BSU06049
ydzW/1 657793..658062 BSU06073
ydzW/2 658061..658189 BSU06074 second part of the ydzW pseudogene
ydzW/3 658189..658605 BSU06076 third part of the ydzW pseudogene
ydzW/4 658615..658758 BSU06077 fourth part of the ydzW pseudogene
ydzW/5 658813..659010 BSU06078 fifth part of the ydzW pseudogene
ydzW/6 659010..659129 BSU06079 sixth part of the ydzW pseudogene
ydzW/7 659129..659221 BSU06083 seventh part of the ydzW pseudogene
yetI 786689..787264 BSU07170
yezB 787264..787560 BSU07180 second part of the yetI pseudogene
appA/1 1213537..1214001 BSU11381
appA/2 1214001..1215167 BSU11382 second part of the appA pseudogene
ymfK/1 1760851..1761303 BSU16890
ymfK/2 1761302..1761640 BSU16900 second part of the ymfK pseudogene
ymzE/1 1862937..1862993 BSU17266
ymzE/2 1862992..1863168 BSU17267 second part of the ymzE pseudogene
yoyK/1 2278108..2278347 BSU21598
yoyK/2 2278340..2278456 BSU21599 second part of the yoyK pseudogene
ypuC/1 2433631..2433885 BSU23329
ypuC/2 2433878..2434165 BSU23330 second part of the ypuC pseudogene
yvzH 3666933..3667016 BSU35679
yvzI 3671416..3671622 BSU35698
yvzE 3672929..3673525 BSU35699
tuaA/1 3658259..3658408 BSU35609
tuaA/2 3658407..3658892 BSU35610

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