Difference between revisions of "NasD"
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=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' ''[[nasB]]-[[nasC]]-[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed|7836289}} | + | * '''Operon:''' |
| + | ** ''[[nasB]]-[[nasC]]-[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed|7836289}} | ||
| + | ** ''[[nasD]]-[[nasE]]-[[nasF]]'' {{PubMed|9765565}} | ||
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasD_355764_358181_-1 nasD] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=nasD_355764_358181_-1 nasD] {{PubMed|22383849}} | ||
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* '''Regulation:''' | * '''Regulation:''' | ||
** expressed in the absence of good nitrogen sources (glutamine or ammonium) ([[TnrA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8799114,9765565 PubMed] | ** expressed in the absence of good nitrogen sources (glutamine or ammonium) ([[TnrA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8799114,9765565 PubMed] | ||
| − | ** expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed] | + | ** ''[[nasD]]'': expressed under anaerobic conditions ([[ResD]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/10972836 PubMed] |
** induced by nitric oxide under anaerobic conditions ([[NsrR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16885456 PubMed] | ** induced by nitric oxide under anaerobic conditions ([[NsrR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/16885456 PubMed] | ||
Revision as of 15:24, 19 March 2014
- Description: assimilatory nitrite reductase (subunit)
| Gene name | nasD |
| Synonyms | nasBC, nirB |
| Essential | no |
| Product | assimilatory nitrite reductase (subunit) |
| Function | utilization of nitrite as nitrogen source |
| Gene expression levels in SubtiExpress: nasD | |
| Interactions involving this protein in SubtInteract: NasD | |
| Metabolic function and regulation of this protein in SubtiPathways: nasD | |
| MW, pI | 88 kDa, 4.948 |
| Gene length, protein length | 2415 bp, 805 aa |
| Immediate neighbours | nasE, nasC |
| Sequences | Protein DNA DNA_with_flanks |
Genetic context 
This image was kindly provided by SubtiList
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Expression at a glance PubMed
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Contents
Categories containing this gene/protein
respiration, utilization of nitrogen sources other than amino acids
This gene is a member of the following regulons
NsrR regulon, ResD regulon, TnrA regulon
The gene
Basic information
- Locus tag: BSU03300
Phenotypes of a mutant
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity: Ammonium hydroxide + 3 NAD(P)+ + H2O = nitrite + 3 NAD(P)H (according to Swiss-Prot)
- Protein family: nitrite and sulfite reductase 4Fe-4S domain family (according to Swiss-Prot)
- Paralogous protein(s): NasB
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: P42435
- KEGG entry: [3]
- E.C. number: 1.7.1.4
Additional information
Expression and regulation
- Regulation:
- Regulatory mechanism:
- Additional information:
Biological materials
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
Reviews
Original publications
