Difference between revisions of "YtiA"
| Line 6: | Line 6: | ||
|''ytiA'' | |''ytiA'' | ||
|- | |- | ||
| − | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''rpmE2 '' | + | |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''rpmE2, rpmEB '' |
|- | |- | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || no | |style="background:#ABCDEF;" align="center"| '''Essential''' || no | ||
| Line 110: | Line 110: | ||
=Expression and regulation= | =Expression and regulation= | ||
| − | * '''Operon:''' | + | * '''Operon:''' ''[[ytiA]]'' {{PubMed|22383849}} |
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEB_3138978_3139226_-1 ytiA] {{PubMed|22383849}} | * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rpmEB_3138978_3139226_-1 ytiA] {{PubMed|22383849}} | ||
| Line 116: | Line 116: | ||
* '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | * '''Sigma factor:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ||
| − | * '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | + | * '''Regulation:''' |
| + | ** induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/15805528 PubMed] | ||
** induced by zinc starvation ([[Zur]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12904577,15049826 PubMed] | ** induced by zinc starvation ([[Zur]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12904577,15049826 PubMed] | ||
| Line 144: | Line 145: | ||
=References= | =References= | ||
| − | <pubmed>17163968,15049826,16547061 ,12904577,,15805528, 19648245 22517742</pubmed> | + | <pubmed>17163968,15049826,16547061 ,12904577,22383849,15805528, 19648245 22517742</pubmed> |
[[Category:Protein-coding genes]] | [[Category:Protein-coding genes]] | ||
Revision as of 18:18, 21 April 2012
- Description: general stress protein, binds in the stationary phase to the ribosome, replaces RpmE under conditions of zinc limitation
| Gene name | ytiA |
| Synonyms | rpmE2, rpmEB |
| Essential | no |
| Product | accessory ribosomal protein |
| Function | survival of salt stress |
| Interactions involving this protein in SubtInteract: YtiA | |
| MW, pI | 9 kDa, 9.808 |
| Gene length, protein length | 246 bp, 82 aa |
| Immediate neighbours | ytiB, ythA |
| Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context 
This image was kindly provided by SubtiList
| |
Expression at a glance PubMed
| |
Contents
Categories containing this gene/protein
translation, general stress proteins (controlled by SigB), phosphoproteins
This gene is a member of the following regulons
The gene
Basic information
- Locus tag: BSU30700
Phenotypes of a mutant
Database entries
- DBTBS entry: no entry
- SubtiList entry: [1]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family: Type B subfamily (according to Swiss-Prot)
- Paralogous protein(s): RpmE
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- phosphorylated on Arg-70 PubMed
- Cofactor(s):
- Effectors of protein activity:
Database entries
- Structure:
- UniProt: O34967
- KEGG entry: [2]
- E.C. number:
Additional information
Expression and regulation
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References
