Difference between revisions of "YfkN"
Line 10: | Line 10: | ||
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed] | |style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed] | ||
|- | |- | ||
− | |style="background:#ABCDEF;" align="center"| '''Product''' || 2',3' cyclic nucleotide phosphodiesterase, 2' (or 3') nucleotidase and 5' nucleotidase | + | |style="background:#ABCDEF;" align="center"| '''Product''' || 2',3' cyclic nucleotide phosphodiesterase, <br/>2' (or 3') nucleotidase and 5' nucleotidase |
|- | |- | ||
|style="background:#ABCDEF;" align="center"|'''Function''' || probably phosphate acquisition | |style="background:#ABCDEF;" align="center"|'''Function''' || probably phosphate acquisition | ||
Line 92: | Line 92: | ||
=Expression and regulation= | =Expression and regulation= | ||
− | * '''Operon:''' | + | * '''Operon:''' ''yfkN'' {{PubMed|16291680}} |
* '''[[Sigma factor]]:''' | * '''[[Sigma factor]]:''' | ||
− | * '''Regulation:''' repressed by glucose (5.2-fold) ([[CcpA]]) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed] | + | * '''Regulation:''' |
− | ** expressed under conditions of phosphate limitation ([[PhoP]]) | + | ** repressed by glucose (5.2-fold) ([[CcpA]]) [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed] |
+ | ** expressed under conditions of phosphate limitation ([[PhoP]]) {{PubMed|16291680}} | ||
− | * '''Regulatory mechanism:''' | + | * '''Regulatory mechanism:''' |
− | ** [[ | + | ** [[CcpA]]: transcription repression [http://www.ncbi.nlm.nih.gov/pubmed/12850135 PubMed] |
+ | ** [[PhoP]]: transcription activation {{PubMed|16291680}} | ||
* '''Additional information:''' | * '''Additional information:''' |
Revision as of 18:27, 31 August 2009
- Description: extracellular 2',3' cyclic nucleotide phosphodiesterase, 2' (or 3') nucleotidase and 5' nucleotidase
Gene name | yfkN |
Synonyms | |
Essential | yes PubMed |
Product | 2',3' cyclic nucleotide phosphodiesterase, 2' (or 3') nucleotidase and 5' nucleotidase |
Function | probably phosphate acquisition |
MW, pI | 159 kDa, 5.021 |
Gene length, protein length | 4386 bp, 1462 aa |
Immediate neighbours | yfkO, yfkM |
Get the DNA and protein sequences (Barbe et al., 2009) | |
Genetic context This image was kindly provided by SubtiList
|
Contents
The gene
Basic information
- Locus tag: BSU07840
Phenotypes of a mutant
essential PubMed
Database entries
- DBTBS entry: [1]
- SubtiList entry: [2]
Additional information
The protein
Basic information/ Evolution
- Catalyzed reaction/ biological activity:
- Protein family:
- Paralogous protein(s): YhcR
Extended information on the protein
- Kinetic information:
- Domains:
- Modification:
- Cofactor(s):
- Effectors of protein activity:
- Interactions:
- Localization: extracellular (signal peptide) PubMed
Database entries
- Structure:
- UniProt: O34313
- KEGG entry: [3]
- E.C. number:
Additional information
Expression and regulation
- Operon: yfkN PubMed
- Regulation:
- Additional information:
Biological materials
- Mutant:
- Expression vector:
- lacZ fusion:
- GFP fusion:
- two-hybrid system:
- Antibody:
Labs working on this gene/protein
Your additional remarks
References