oxdD

oxdD
168

oxalate decarboxylase, inner spore coat protein

Locus
BSU_18670
Molecular weight
43.39 kDa
Isoelectric point
5.36
Protein length
392 aaSequenceBlast
Gene length
1179 bpSequenceBlast
Function
protection of the spore
Product
oxalate decarboxylase
Essential
no
E.C.
4.1.1.2
Synonyms
oxdD, yoaN
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG2140 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,037,601  2,038,779
The protein
Catalyzed reaction/ biological activity
H+ + oxalate --> CO2 + formate (according to UniProt)
Structure
1L3J (PDB) (OxdC, 59% identity) PubMed
O34767 (AlphaFold)
Paralogous protein(s)
OxdC
Localization
inner spore coat, localization depends on SafA  PubMed
Expression and Regulation
Operons
Genes
oxdD
Description
PubMed
Regulation
expressed late during sporulation in the mother cell (SigK, GerE) PubMed
Regulatory mechanism
GerE: repression, PubMed, in gerE regulon
Sigma factors
SigK: sigma factor, PubMed, in sigK regulon
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oxdD

2025-04-03 12:56:00

ghost

103

e773da7cc66a1f582d8e8ebeee5c0c94f65f75cb

810CEA49BC27DDBCD30A40B8382FE31840AF4EBC

Biological materials
Mutant
MGNA-A842 (yoaN::erm), available at the NBRP B. subtilis, Japan
BKE18670 (oxdD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGCACCTCGTTTTAGAAA,  downstream forward: _UP4_TAAAGACGTAACAGATCACA
BKK18670 (oxdD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATGCACCTCGTTTTAGAAA,  downstream forward: _UP4_TAAAGACGTAACAGATCACA
References
Reviews
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Original Publications
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1568DD457FDD482B3C14954A95F62BE338CBD15D

Page visits: 3159

Time of last update: 2025-04-02 20:49:25

Author of last update: Melvin.boenninger