ydhD

ydhD
168

spore coat peptidoglycan hydrolase

Locus
BSU_05710
Molecular weight
48.80 kDa
Isoelectric point
9.07
Protein length
420 aaSequenceBlast
Gene length
1263 bpSequenceBlast
Function
unknown
Product
spore coat glycosylase
Essential
no
Synonyms
ydhD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

List of homologs in different organisms, belongs to COG3858 (Galperin et al., 2021)

This gene is a member of the following regulons

SigE regulon

Gene
Coordinates
616,672 → 617,934
The protein
Protein family
Glycosyl hydrolase 18 family (according to UniProt)
Chitinase class II subfamily (with YaaH, according to UniProt)
Domains
contains two N-acetylglucosamine-polymer-binding LysM domains at  the N-terminus PubMed
glycoside hydrolase family 18 domain (aa 120 to 400)
2 LysM domains (aa 2-45, aa 48-92) (according to UniProt)
Structure
3CZ8 (PDB)
O05495 (AlphaFold)
Paralogous protein(s)
YaaH
Localization
spore wall (according to Swiss-Prot)
Expression and Regulation
Operons
Genes
ydhD
Description
PubMed
Regulation
expressed during sporulation (SigE)
Sigma factors
SigE: sigma factor, PubMed, in sigE regulon
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ydhD

2025-03-10 19:12:58

ghost

70

e187a5bb8a1f65255e6d51d5ad26668f8acee5ee

138DB0CC02C2121B27A580A15A95B5F13DF7B025

Biological materials
Mutant
MGNA-C179 (ydhD::erm), available at the NBRP B. subtilis, Japan
BKE05710 (ΔydhD::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATTTAACCCCCATTATT,  downstream forward: _UP4_TAAAAAAAGACACCAGAGCT
BKK05710 (ΔydhD::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATATTTAACCCCCATTATT,  downstream forward: _UP4_TAAAAAAAGACACCAGAGCT
References
Reviews
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Original Publications
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Page visits: 5462

Time of last update: 2025-04-03 13:47:53

Author of last update: Jstuelk