XynC

• Description: endo-xylanase, preference for methylglucurono-xylan
  
  

Gene name	xynC
Synonyms	ynfF
Essential	no
Product	endo-xylanase
Function	xylan degradation
Gene expression levels in SubtiExpress: xynC
MW, pI	47 kDa, 9.078
Gene length, protein length	1266 bp, 422 aa
Immediate neighbours	ynfE, xynD
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance   PubMed

Categories containing this gene/protein

utilization of specific carbon sources

This gene is a member of the following regulons

AbrB regulon

The gene

Basic information

• Locus tag: BSU18150

Database entries

• BsubCyc: BSU18150

• DBTBS entry: no entry

• SubtiList entry: [1]

The protein

Basic information/ Evolution

• Catalyzed reaction/ biological activity: Endohydrolysis of (1->4)-beta-D-xylosyl links in some glucuronoarabinoxylans (according to Swiss-Prot)

• Protein family: glycosyl hydrolase 30 family (according to Swiss-Prot)

• Paralogous protein(s):

Extended information on the protein

• Kinetic information:

• Domains:

• Modification:

• Cofactor(s):

• Effectors of protein activity:

• Interactions:

• Localization:
  • extracellular (signal peptide) PubMed

Database entries

• BsubCyc: BSU18150

• Structure: 3GTN PubMed

• UniProt: Q45070

• KEGG entry: [2]

• E.C. number: 3.2.1.136

Expression and regulation

• Operon: xynD-xynC PubMed

• Expression browser: xynC PubMed

• Sigma factor:

• Regulation:

• Regulatory mechanism:
  • AbrB: transcription repression PubMed

• Additional information:

Biological materials

• Mutant:

• Expression vector:

• lacZ fusion:

• GFP fusion:

• two-hybrid system:

• Antibody:

References

Reviews

Massimiliano Marvasi, Pieter T Visscher, Lilliam Casillas Martinez
Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis.
FEMS Microbiol Lett: 2010, 313(1);1-9
[PubMed:20735481] [WorldCat.org] [DOI] (I p)