Databases and bioinformatic tools

Bingyao Zhu, Jörg Stülke
SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis.
Nucleic Acids Res: 2018, 46(D1);D743-D748
[PubMed:29788229] [WorldCat.org] [DOI] (I p)

Raphael H Michna, Bingyao Zhu, Ulrike Mäder, Jörg Stülke
SubtiWiki 2.0--an integrated database for the model organism Bacillus subtilis.
Nucleic Acids Res: 2016, 44(D1);D654-62
[PubMed:26433225] [WorldCat.org] [DOI] (I p)

Raphael H Michna, Fabian M Commichau, Dominik Tödter, Christopher P Zschiedrich, Jörg Stülke
SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information.
Nucleic Acids Res: 2014, 42(Database issue);D692-8
[PubMed:24178028] [WorldCat.org] [DOI] (I p)

Ulrike Mäder, Arne G Schmeisky, Lope A Flórez, Jörg Stülke
SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis.
Nucleic Acids Res: 2012, 40(Database issue);D1278-87
[PubMed:22096228] [WorldCat.org] [DOI] (I p)

Lope A Flórez, Katrin Gunka, Rafael Polanía, Stefan Tholen, Jörg Stülke
SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants.
BMC Syst Biol: 2011, 5;5
[PubMed:21219666] [WorldCat.org] [DOI] (I e)

Lope A Flórez, Christoph R Lammers, Raphael Michna, Jörg Stülke
CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
Bioinformatics: 2010, 26(23);2997-9
[PubMed:20947526] [WorldCat.org] [DOI] (I p)

Lope A Flórez, Sebastian F Roppel, Arne G Schmeisky, Christoph R Lammers, Jörg Stülke
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki.
Database (Oxford): 2009, 2009;bap012
[PubMed:20157485] [WorldCat.org] [DOI] (I p)

Christoph R Lammers, Lope A Flórez, Arne G Schmeisky, Sebastian F Roppel, Ulrike Mäder, Leendert Hamoen, Jörg Stülke
Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis.
Microbiology (Reading): 2010, 156(Pt 3);849-859
[PubMed:19959575] [WorldCat.org] [DOI] (I p)