ydbM

ydbM
168

acyl-CoA dehydrogenase

Locus
BSU_04520
Molecular weight
41.98 kDa
Isoelectric point
5.72
Protein length
381 aaSequenceBlast
Gene length
1146 bpSequenceBlast
Function
sulphur metabolism
Product
acyl-CoA dehydrogenase
Essential
no
Synonyms
ydbM
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1960 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
505,152  506,297
The protein
Protein family
Acyl-CoA dehydrogenase family (according to UniProt)
Cofactors
FAD (according to UniProt) PubMed
Structure
3MXL (PDB) (from Micromonospora carbonacea var. africana, 30% identity) PubMed
P96608 (AlphaFold)
Expression and Regulation
Operons
Genes
ydbM
Description
PubMed
Regulation
repressed in the presence of cysteine (CymR) PubMed
Regulatory mechanism
CymR: repression, PubMed, in cymR regulon
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ydbM

2025-03-11 06:37:24

Jstuelk

75

96fb78eaea72927c9114a4ad4376c187ee39fc0b

BC4D037529E89837DB9D1FFE0F273A47D93A29A3

Biological materials
Mutant
MGNA-C119 (ydbM::erm), available at the NBRP B. subtilis, Japan
BKE04520 (ydbM::erm  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT,  downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG
BKK04520 (ydbM::kan  trpC2) available at BGSC,  PubMed, upstream reverse: _UP1_CATCCGGCAGCCCCCCAGTT,  downstream forward: _UP4_TAAAAAAAAGAGCCTTACCG
References
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Page visits: 2319

Time of last update: 2025-04-10 07:16:06

Author of last update: Jstuelk